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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
369
target gene predictions
328
candidate regulatory elements
210
histone modifications
197
chromatin state
100
binding sites
89
accessible chromatin
72
variant allelic effects
12
gene expression
9
eQTL
5
caQTL
5
hQTL
3
meQTL
2
sQTL
1
other
Date released
484
September, 2022
330
February, 2021
174
May, 2021
111
November, 2021
101
February, 2024
52
June, 2020
35
May, 2020
33
May, 2022
29
October, 2022
28
January, 2021
9
November, 2022
6
August, 2017
4
August, 2021
2
January, 2020
2
October, 2019
1
January, 2022
1
March, 2020
Available data
1589
bed bed3+
bigWig
164
bed bed9
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1401
Homo sapiens
Biosample type
2338
tissue
2306
cell line
1402
primary cell
375
in vitro differentiated cells
4
stem cell
Organ
349
epithelium
189
connective tissue
100
vasculature
95
skin of body
70
blood vessel
43
kidney
43
mammary gland
41
penis
37
extraembryonic component
37
musculature of body
32
pancreas
29
liver
27
brain
25
lung
20
embryo
20
heart
19
artery
18
eye
18
vein
14
bronchus
12
bone element
12
intestine
11
bone marrow
10
prostate gland
9
blood
9
bodily fluid
9
lymphatic vessel
8
esophagus
8
placenta
6
stomach
5
adrenal gland
5
trachea
4
mouth
4
spinal cord
4
uterus
3
large intestine
2
gonad
2
small intestine
2
thyroid gland
1
limb
1
ovary
Project
1262
AMP
111
ENCODE
29
T1D
Genome assembly (visualization)
1402
hg19
427
GRCh38
files.file_type!
bigWig
BIOSAMPLE
TYPE
1402 results
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Clear Filters
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
binding sites
accessible chromatin
variant allelic effects
gene expression
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
2
86
1
2
1
2
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
5
7
30
1
B cell
10
14
8
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
CD8-positive, alpha-beta memory T cell
7
8
7
mononuclear cell
6
7
6
1
foreskin keratinocyte
4
11
4
endothelial cell of umbilical vein
4
6
5
2
1
trophoblast cell
5
7
1
4
1
endothelial cell
7
1
2
2
2
1
1
1
fibroblast of lung
4
6
4
2
foreskin fibroblast
2
6
2
1
4
1
regulatory T cell
4
5
1
3
1
2
T cell
4
4
4
1
2
keratinocyte
5
3
2
3
1
1
natural killer cell
5
6
1
3
CD4-positive, alpha-beta T cell
3
8
3
neutrophil
3
4
2
1
2
1
1
T-helper 1 cell
3
6
3
1
fibroblast
4
1
2
6
hepatocyte
3
1
4
1
1
1
2
mammary epithelial cell
1
3
3
1
4
1
neurosphere
3
7
3
skeletal muscle myoblast
2
4
1
3
2
1
smooth muscle cell
6
2
2
1
1
1
bronchial epithelial cell
2
4
1
2
2
1
fibroblast of dermis
4
4
3
1
mammary gland epithelial cell
4
3
3
1
1
osteoblast
2
2
2
1
3
2
pericyte cell
10
1
1
T-helper 17 cell
3
5
3
T-helper 2 cell
3
5
3
naive thymus-derived CD4-positive, alpha-beta T cell
2
4
1
1
1
1
1
dermis blood vessel endothelial cell
2
6
2
endothelial cell of hepatic sinusoid
6
4
fibroblast of cardiac tissue
4
3
3
epithelial cell of prostate
3
4
2
mature neutrophil
1
7
1
naive T cell
3
3
3
astrocyte
4
2
1
1
fibroblast of breast
2
4
2
fibroblast of mammary gland
1
2
1
1
2
1
fibroblast of pulmonary artery
1
2
1
1
2
1
fibroblast of villous mesenchyme
1
2
1
1
2
1
kidney tubule cell
2
3
2
1
myoepithelial cell of mammary gland
2
4
2
pancreatic ductal cell
3
2
1
1
1
retinal pigment epithelial cell
1
2
1
1
2
1
skeletal muscle satellite cell
2
2
2
1
1
skin fibroblast
3
2
2
1
CD1c-positive myeloid dendritic cell
1
2
1
1
1
1
macrophage
3
1
3
pulmonary artery endothelial cell
1
2
1
1
1
1
T-cell
2
4
cardiac muscle cell
1
2
1
2
choroid plexus epithelial cell
1
2
1
1
1
dermis lymphatic vessel endothelial cell
2
2
2
epithelial cell of esophagus
1
2
1
2
epithelial cell of proximal tubule
1
2
1
1
1
erythroblast
2
2
2
foreskin melanocyte
1
4
1
glutamatergic neuron
2
4
mesenchymal stem cell
1
1
1
1
1
1
olfactory receptor cell
6
peripheral blood mononuclear cell
4
1
1
renal cortical epithelial cell
1
2
1
1
1
skeletal muscle fiber
2
2
2
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
1
4
astrocyte of the cerebellum
1
2
1
1
astrocyte of the hippocampus
1
2
1
1
fibroblast of peridontal ligament
1
2
1
1
glomerular endothelial cell
1
2
1
1
glomerular visceral epithelial cell
1
2
1
1
hepatic stellate cell
1
1
1
1
1
iris pigment epithelial cell
1
2
1
1
kidney epithelial cell
1
2
1
1
kidney glomerular epithelial cell
1
2
1
1
luminal epithelial cell of mammary gland
3
1
1
lung microvascular endothelial cell
1
3
1
non-pigmented ciliary epithelial cell
1
2
1
1
skeletal muscle cell
1
2
1
1
smooth muscle cell of the brain vasculature
1
2
1
1
tracheal epithelial cell
2
2
1
type I muscle cell
1
1
1
1
1
type II muscle cell
1
1
1
1
1
acute myeloid leukemia cell
2
2
aortic adventitial fibroblast
1
2
1
astrocyte of the spinal cord
1
2
1
brain microvascular endothelial cell
1
2
1
cardiac fibroblast
3
1
fibroblast of gingiva
1
2
1
fibroblast of the aortic adventitia
1
2
1
fibroblast of the conjunctiva
1
2
1
inflammatory macrophage
1
3
mast cell
1
1
1
1
myofibroblast cell
1
3
pancreatic acinar cell
3
1
pancreatic delta cell
3
1
preadipocyte
2
1
1
renal epithelial cell
1
2
1
stromal cell of bone marrow
1
2
1
CD4-positive helper T cell
2
1
Ishikawa
1
1
1
Th1 cell
1
1
1
Th17 cell
1
1
1
adipocyte
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
basal cell
1
2
bone marrow cell
1
2
colon epithelial cell
3
cortical cell of adrenal gland
2
1
enterocyte
3
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
gabaergic neuron
2
1
kidney capillary endothelial cell
1
1
1
mammary stem cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
neoplastic cell
1
1
1
pancreatic A cell
3
pancreatic alpha cell
2
1
pancreatic beta cell
2
1
peripheral blood stem cell
1
1
1
plasma cell
1
1
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
type B pancreatic cell
3
type II pneumocyte
2
1
cardiac fibroblast
2
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
Th2 cell
1
1
activated CD4-positive, alpha-beta T cell
2
aortic endothelial cell
1
1
blood vessel smooth muscle cell
2
brain pericyte
1
1
cardiac muscle myoblast
1
1
chronic lymphocytic leukemia cell
1
1
columnar chondrocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
enteric smooth muscle cell
2
erythroid progenitor cell
1
1
glial cell
1
1
goblet cell
2
head and neck squamous cell carcinoma
1
1
leukemic stem cell
1
1
leukocyte
1
1
mantle cell lymphoma cell
2
megakaryocyte
2
memory B cell
2
meso-epithelial cell
1
1
mesothelial cell
1
1
naive B cell
2
naive t cell
1
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
neural cell
1
1
neuronal stem cell
1
1
oligodendrocyte
1
1
pancreatic endocrine cell
1
1
parietal cell
1
1
peptic cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
renal proximal tubule cell
1
1
small cell ovarian carcinoma cell
1
1
smooth muscle cell of the esophagus
2
somatic muscle myotube
1
1
thyroid follicular cell
1
1
vascular associated smooth muscle cell
2
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD8-positive, alpha-beta T cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alveolar cell type II
1
alveolar macrophage
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
basal cell of epidermis
1
bone cell
1
bronchial goblet cell
1
cardiac endothelial cell
1
cell
1
ciliated cell
1
club cell
1
colon goblet cell
1
colorectal cancer
1
conventional dendritic cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
eccrine cell
1
effector memory CD4-positive, alpha-beta T cell
1
endocardial cell
1
endothelial cell of coronary artery
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
fat cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
foveolar cell of stomach
1
granular cell of epidermis
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
induced T-regulatory cell
1
intestinal epithelial cell
1
intestinal tuft cell
1
luminal epithelial cell of prostatic duct
1
luteal cell
1
lymphocyte of B lineage
1
mature NK T cell
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
melanocyte
1
meningioma cell
1
microglial cell
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
myoepithelial cell
1
naive regulatory T cell
1
natural killer cell mediated cytotoxicity
1
neural progenitor cell
1
neuron
1
neutrophil progenitor cell
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
non-neuronal cell
1
oligodendrocyte precursor cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
paneth cell
1
peripheral blood
1
plasmacytoid dendritic cell
1
progenitor cell
1
regular atrial cardiac myocyte
1
respiratory goblet cell
1
schwann cell
1
seminoma cell
1
skeletal muscle fibroblast
1
small intestine goblet cell
1
smooth muscle cell of the coronary artery
1
somatic gonadal cell
1
sperm
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
type I cell of adrenal cortex
1
type I pneumocyte
1
type II cell of adrenal cortex
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
1
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