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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
482
accessible chromatin
370
target gene predictions
197
chromatin state
161
candidate regulatory elements
118
histone modifications
75
variant allelic effects
29
binding sites
12
gene expression
9
eQTL
5
caQTL
5
hQTL
3
meQTL
2
sQTL
1
other
Date released
487
September, 2022
February, 2021
333
November, 2021
187
May, 2021
117
February, 2024
81
May, 2020
56
January, 2021
52
June, 2020
40
May, 2022
29
October, 2022
23
January, 2020
19
April, 2020
17
August, 2021
9
November, 2022
7
October, 2019
6
August, 2017
2
January, 2022
2
November, 2020
1
June, 2021
1
March, 2020
Available data
1255
bed bed3+
397
bigWig
164
bed bed9
27
bed bed9+
13
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1424
Homo sapiens
Biosample type
1845
tissue
1469
primary cell
1007
cell line
225
in vitro differentiated cells
4
stem cell
Organ
412
epithelium
188
connective tissue
92
vasculature
72
skin of body
65
pancreas
60
blood vessel
54
kidney
40
musculature of body
37
liver
34
mammary gland
32
extraembryonic component
30
brain
29
lung
22
intestine
22
penis
20
heart
18
eye
17
embryo
14
vein
13
artery
11
adrenal gland
11
bronchus
11
stomach
10
lymphatic vessel
9
esophagus
8
bone element
8
bone marrow
8
prostate gland
7
placenta
6
large intestine
4
small intestine
3
gonad
3
mouth
3
spinal cord
3
thyroid gland
3
uterus
2
ovary
1
blood
1
bodily fluid
1
limb
1
thymus
1
trachea
Project
1060
AMP
333
ENCODE
57
T1D
19
LungMap
Genome assembly (visualization)
1469
hg19
706
GRCh38
month_released!
February, 2021
BIOSAMPLE
TYPE
1469 results
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table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
chromatin state
candidate regulatory elements
histone modifications
variant allelic effects
binding sites
gene expression
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
2
84
1
2
1
CD8-positive, alpha-beta T cell
4
5
1
30
common myeloid progenitor, CD34-positive
14
13
13
B cell
6
10
8
9
CD14-positive monocyte
19
4
4
CD4-positive, alpha-beta memory T cell
9
9
9
endothelial cell
15
7
2
1
1
1
fibroblast
16
4
6
1
pericyte cell
10
10
1
1
CD8-positive, alpha-beta memory T cell
7
7
7
T cell
6
4
4
4
2
smooth muscle cell
9
6
2
1
1
1
hepatocyte
8
3
1
1
3
2
macrophage
12
3
3
mononuclear cell
6
6
6
regulatory T cell
5
4
3
3
astrocyte
8
4
1
1
endothelial cell of umbilical vein
2
4
5
2
1
natural killer cell
3
5
3
3
trophoblast cell
1
5
4
4
fibroblast of lung
4
4
3
2
keratinocyte
2
5
3
2
1
T-helper 1 cell
3
3
3
3
endothelial cell of hepatic sinusoid
6
6
excitatory neuron
12
fibroblast of cardiac tissue
2
4
3
3
foreskin keratinocyte
4
4
4
mammary gland epithelial cell
1
4
3
3
1
neutrophil
3
2
2
1
2
1
1
T-helper 17 cell
2
3
3
3
T-helper 2 cell
2
3
3
3
erythroblast
5
2
2
2
fibroblast of dermis
4
3
3
1
pancreatic beta cell
8
2
1
skeletal muscle satellite cell
5
2
2
1
1
pancreatic acinar cell
6
3
1
pancreatic delta cell
5
4
1
pancreatic ductal cell
6
3
1
skeletal muscle myoblast
2
2
3
2
1
naive T cell
3
3
3
neurosphere
3
3
3
osteoblast
4
2
1
1
1
pancreatic alpha cell
7
2
skeletal muscle fiber
5
2
2
skin fibroblast
2
3
2
2
glutamatergic neuron
6
2
kidney tubule cell
2
2
2
2
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
1
1
1
1
1
CD4-positive, alpha-beta T cell
1
3
3
bronchial epithelial cell
1
2
2
2
epithelial cell of prostate
3
2
2
foreskin fibroblast
1
2
1
1
2
luminal epithelial cell of mammary gland
2
3
1
1
mature neutrophil
7
retinal pigment epithelial cell
3
1
1
1
1
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
type II pneumocyte
4
2
1
choroid plexus epithelial cell
1
1
1
1
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis blood vessel endothelial cell
2
2
2
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
epithelial cell of proximal tubule
1
1
1
1
1
1
fibroblast of breast
2
2
2
hepatic stellate cell
3
1
1
1
memory B cell
4
2
mesenchymal stem cell
2
1
1
1
1
myoepithelial cell of mammary gland
2
2
2
olfactory receptor cell
6
renal cortical epithelial cell
2
1
1
1
1
cardiac fibroblast
3
2
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
1
4
astrocyte of the cerebellum
1
1
1
1
1
astrocyte of the hippocampus
1
1
1
1
1
basal cell
2
1
2
cardiac muscle cell
1
1
2
1
epithelial cell of esophagus
1
1
1
2
fibroblast of mammary gland
1
1
1
1
1
fibroblast of pulmonary artery
1
1
1
1
1
fibroblast of villous mesenchyme
1
1
1
1
1
gabaergic neuron
3
2
glomerular endothelial cell
1
1
1
1
1
glomerular visceral epithelial cell
2
1
1
1
inhibitory neuron
5
kidney epithelial cell
1
1
1
1
1
kidney glomerular epithelial cell
2
1
1
1
naive B cell
3
2
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
skeletal muscle cell
1
1
1
1
1
smooth muscle cell of the brain vasculature
1
1
1
1
1
CD1c-positive myeloid dendritic cell
1
1
1
1
adipocyte
2
1
1
blood vessel smooth muscle cell
2
2
brain microvascular endothelial cell
1
1
1
1
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of peridontal ligament
1
1
1
1
inflammatory macrophage
1
3
iris pigment epithelial cell
1
1
1
1
kidney capillary endothelial cell
1
1
1
1
mammary epithelial cell
1
1
1
1
megakaryocyte
2
2
mesothelial cell
2
1
1
myofibroblast cell
1
3
non-pigmented ciliary epithelial cell
1
1
1
1
pancreatic polypeptide-secreting cell
2
1
1
pulmonary artery endothelial cell
1
1
1
1
smooth muscle cell of the esophagus
2
2
type I pneumocyte
3
1
CD4-positive helper T cell
1
2
activated CD4-positive, alpha-beta T cell
1
2
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
aortic endothelial cell
2
1
astrocyte of the spinal cord
1
1
1
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
fibroblast of gingiva
1
1
1
fibroblast of the aortic adventitia
1
1
1
fibroblast of the conjunctiva
1
1
1
foreskin melanocyte
1
1
1
glial cell
2
1
goblet cell
1
2
leukocyte
2
1
lung microvascular endothelial cell
1
1
1
mammary stem cell
1
1
1
mast cell
1
1
1
naive t cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic stellate cell
2
1
parietal cell
1
1
1
peptic cell
1
1
1
plasma cell
2
1
plasmacytoid dendritic cell
2
1
regular cardiac myocyte
1
1
1
schwann cell
2
1
stromal cell of bone marrow
1
1
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Muller cell
2
Schwann cell
2
T follicular helper cell
2
T-cell
2
activated CD8-positive, alpha-beta T cell
1
1
acute myeloid leukemia cell
2
alveolar macrophage
1
1
aortic adventitial fibroblast
1
1
basal cell of epidermis
1
1
bone marrow cell
2
brain pericyte
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
central memory CD8-positive, alpha-beta T cell
2
colon goblet cell
1
1
conventional dendritic cell
1
1
eccrine cell
1
1
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
gamma-delta T cell
2
granular cell of epidermis
1
1
intestinal tuft cell
1
1
luteal cell
1
1
mature NK T cell
1
1
mature natural killer cell
2
melanocyte
1
1
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
microglial cell
1
1
myoepithelial cell
1
1
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuron
2
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
paneth cell
1
1
regular atrial cardiac myocyte
1
1
renal epithelial cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small intestine goblet cell
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-lymphocyte
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Ishikawa
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
adult endothelial progenitor cell
1
bronchial goblet cell
1
cardiac fibroblast
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
endothelial cell of artery
1
enteroendocrine cell
1
erythrocyte
1
erythroid cell
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of arm
1
gastric goblet cell
1
granulosa cell
1
hepatoblast
1
immature natural killer cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
metanephros
1
microglial cell/astrocyte
1
myeloid dendritic cell
1
myotube
1
neoplastic cell
1
neuroendocrine cell
1
non-neuronal cell
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal epithelial cell
1
peripheral blood stem cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
preadipocyte
1
primordial germ cell
1
progenitor cell
1
proximal tubule cells with injury markers
1
pulmonary interstitial fibroblast
1
renal intercalated cell
1
renal principal cell
1
retinal bipolar neuron
1
smooth muscle cell of the coronary artery
1
somatic gonadal cell
1
sympathetic neuron
1
tracheal epithelial cell
1
trophoblast giant cell
1
ureteric bud
1
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