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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
553
accessible chromatin
437
target gene predictions
407
candidate regulatory elements
304
histone modifications
241
chromatin state
138
binding sites
87
variant allelic effects
44
eQTL
41
gene expression
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
592
September, 2022
496
February, 2021
333
November, 2021
215
May, 2021
122
February, 2024
93
May, 2020
74
June, 2020
56
January, 2021
41
August, 2021
40
January, 2022
40
May, 2022
31
October, 2022
27
November, 2022
26
January, 2020
19
April, 2020
16
February, 2020
13
March, 2020
10
August, 2017
9
August, 2018
9
October, 2019
4
February, 2023
4
September, 2023
2
November, 2019
2
November, 2020
1
June, 2021
Available data
1942
bed bed3+
tsv
422
bigWig
204
bed bed9
108
txt
27
bed bed9+
24
csv
16
bigBed narrowPeak
9
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2230
Homo sapiens
Biosample type
2440
tissue
2330
cell line
1880
primary cell
395
in vitro differentiated cells
4
stem cell
Organ
532
epithelium
294
connective tissue
126
vasculature
109
skin of body
86
blood vessel
79
pancreas
72
kidney
52
musculature of body
50
embryo
49
liver
49
mammary gland
47
penis
45
extraembryonic component
38
brain
34
lung
31
heart
29
eye
24
artery
23
intestine
20
vein
16
bronchus
14
bone element
14
lymphatic vessel
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
nose
4
small intestine
4
spinal cord
3
thyroid gland
2
adipose tissue
2
ovary
1
limb
1
pericardium
1
testis
1
thymus
Project
1864
AMP
333
ENCODE
59
T1D
19
LungMap
Genome assembly (visualization)
2190
hg19
763
GRCh38
files.file_type!
tsv
BIOSAMPLE
TYPE
2275 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
binding sites
variant allelic effects
eQTL
gene expression
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
2
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
4
5
7
30
1
B cell
6
10
14
8
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
endothelial cell
15
7
1
2
2
1
1
2
fibroblast
16
4
1
6
2
macrophage
12
3
3
7
1
hepatocyte
8
3
1
4
1
1
2
4
CD8-positive, alpha-beta memory T cell
7
8
7
T cell
6
4
4
4
2
2
pericyte cell
10
10
1
1
regulatory T cell
5
4
5
1
3
1
2
endothelial cell of umbilical vein
2
4
6
5
2
1
mononuclear cell
6
7
6
1
smooth muscle cell
9
6
2
1
1
1
foreskin keratinocyte
4
11
4
natural killer cell
3
5
6
1
3
1
trophoblast cell
1
5
7
1
4
keratinocyte
2
5
3
2
3
1
1
T-helper 1 cell
3
3
6
3
1
astrocyte
8
4
2
1
1
fibroblast of lung
4
6
4
2
foreskin fibroblast
1
2
6
2
1
4
skeletal muscle myoblast
2
2
4
1
3
2
1
1
CD4-positive, alpha-beta T cell
1
3
8
3
neutrophil
3
4
2
2
2
1
1
osteoblast
5
2
2
2
1
3
T-helper 17 cell
2
3
5
3
1
T-helper 2 cell
2
3
5
3
1
pancreatic ductal cell
6
3
2
1
1
1
mammary epithelial cell
1
1
3
3
1
4
mammary gland epithelial cell
1
4
3
3
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
4
2
1
1
1
1
neurosphere
3
7
3
pancreatic beta cell
8
3
1
1
skeletal muscle satellite cell
5
2
2
2
2
bronchial epithelial cell
1
2
4
1
2
2
endothelial cell of hepatic sinusoid
6
6
excitatory neuron
12
fibroblast of cardiac tissue
2
4
3
3
fibroblast of dermis
4
4
3
1
pancreatic alpha cell
7
3
1
1
erythroblast
5
2
2
2
pancreatic acinar cell
6
3
1
1
pancreatic delta cell
5
4
1
1
dermis blood vessel endothelial cell
2
6
2
kidney tubule cell
2
2
3
2
1
retinal pigment epithelial cell
3
1
2
1
1
2
epithelial cell of prostate
3
4
2
mature neutrophil
1
7
1
naive T cell
3
3
3
skeletal muscle fiber
5
2
2
skin fibroblast
2
3
2
2
epithelial cell of proximal tubule
1
1
2
1
1
1
1
fibroblast of breast
2
4
2
fibroblast of mammary gland
1
1
2
1
1
2
fibroblast of pulmonary artery
1
1
2
1
1
2
fibroblast of villous mesenchyme
1
1
2
1
1
2
glomerular endothelial cell
2
1
2
1
1
1
glutamatergic neuron
6
2
hepatic stellate cell
3
1
1
1
1
1
kidney glomerular epithelial cell
2
1
2
1
1
1
myoepithelial cell of mammary gland
2
4
2
renal cortical epithelial cell
2
1
2
1
1
1
CD1c-positive myeloid dendritic cell
1
1
2
1
1
1
cardiac muscle cell
1
1
2
1
2
choroid plexus epithelial cell
1
1
2
1
1
1
glomerular visceral epithelial cell
2
1
2
1
1
kidney epithelial cell
1
1
2
1
1
1
luminal epithelial cell of mammary gland
2
3
1
1
mesenchymal stem cell
2
1
1
1
1
1
pulmonary artery endothelial cell
1
1
2
1
1
1
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
type II pneumocyte
4
2
1
T-cell
2
4
astrocyte of the cerebellum
1
1
2
1
1
astrocyte of the hippocampus
1
1
2
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
epithelial cell of esophagus
1
2
1
2
foreskin melanocyte
1
4
1
memory B cell
4
2
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
1
olfactory receptor cell
6
peripheral blood mononuclear cell
4
1
1
skeletal muscle cell
1
1
2
1
1
smooth muscle cell of the brain vasculature
1
1
2
1
1
cardiac fibroblast
3
2
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
1
2
2
alternatively activated macrophage
1
4
basal cell
2
1
2
brain microvascular endothelial cell
1
1
2
1
fibroblast of peridontal ligament
1
1
2
1
fibroblast of the aortic adventitia
1
2
1
1
gabaergic neuron
3
2
inhibitory neuron
5
iris pigment epithelial cell
1
1
2
1
kidney capillary endothelial cell
1
1
1
1
1
lung microvascular endothelial cell
1
3
1
mast cell
1
1
1
1
1
myofibroblast cell
1
1
3
naive B cell
3
2
non-pigmented ciliary epithelial cell
1
1
2
1
pancreatic polypeptide-secreting cell
2
1
1
1
plasma cell
2
1
1
1
tracheal epithelial cell
1
2
2
activated CD4-positive, alpha-beta T cell
1
2
1
acute myeloid leukemia cell
2
2
adipocyte
2
1
1
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the spinal cord
1
2
1
blood vessel smooth muscle cell
2
2
cardiac fibroblast
3
1
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of gingiva
1
2
1
fibroblast of the conjunctiva
1
2
1
inflammatory macrophage
1
3
megakaryocyte
2
2
mesothelial cell
2
1
1
pancreatic stellate cell
2
1
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
smooth muscle cell of the esophagus
2
2
stromal cell of bone marrow
1
2
1
type I pneumocyte
3
1
Ishikawa
1
1
1
T follicular helper cell
2
1
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD8-positive, alpha-beta T cell
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
glial cell
2
1
goblet cell
1
2
leukocyte
2
1
mammary stem cell
1
1
1
mesangial cell
2
1
microglial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
schwann cell
2
1
smooth muscle cell of the coronary artery
1
1
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
Th2 cell
1
1
alveolar macrophage
1
1
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of coronary artery
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
gamma-delta T cell
2
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
leukemic stem cell
1
1
luteal cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
mature natural killer cell
2
melanocyte
1
1
memory T cell
2
memory regulatory T cell
2
meso-epithelial cell
1
1
myoepithelial cell
1
1
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
renal proximal tubule cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of artery
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
naive B cel
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
progenitor cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
in vitro differentiated cells
hematopoietic multipotent progenitor cell
1
10
19
1
10
1
neural progenitor cell
10
5
5
15
4
adipocyte
4
6
4
1
6
1
embryonic stem cell
6
1
1
5
1
mesenchymal stem cell
1
3
3
1
2
1
T-cell acute lymphoblastic leukemia
5
3
endodermal cell
2
4
2
mesendoderm
1
2
2
1
1
1
neuroblastoma cell line
6
2
neuronal stem cell
1
1
2
2
2
cardiac muscle cell
1
1
4
1
mesodermal cell
1
4
1
1
bipolar neuron
1
2
2
1
dendritic cell
6
muscle cell
2
2
2
retinal pigment epithelial cell
6
SGBS preadipocytes
5
chondrocyte
5
neural cell
1
3
1
trophoblast cell
2
2
1
B cell
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
2
adipose-derived stem cell
2
1
1
cardiomyocytes (cardiac muscle cell)
3
1
colon adenocarcinoma
2
2
ectodermal cell
1
2
1
hepatocyte
1
2
1
islet precursor cell
1
2
1
neuron
1
2
1
olfactory neurosphere cell line
1
1
1
1
rhabdomyosarcoma cell
4
smooth muscle cell
1
2
1
cardiac mesoderm primordium
1
1
1
esophageal adenocarcinoma
2
1
foreskin keratinocyte
1
1
1
foreskin melanocyte
1
1
1
iPS DF 4.7 Cell Line
1
1
1
mammary gland epithelial cell
1
1
1
pancreatic ductal adenocarcinoma
3
BICR 31
1
1
CD4-positive helper T cell
1
1
CD8-Positive T-Lymphocytes
1
1
EAhy 926 cell
1
1
T-lymphoma cell line
1
1
Th1 cell
1
1
atypical teratoid rhabdoid tumor
1
1
cardiac myoblast
2
cardiac precursors (cardiac muscle cell)
1
1
cardiovascular progenitor cell
2
chronic myelomonocytic leukemia
1
1
colorectal adenocarcinoma
1
1
dermis microvascular lymphatic vessel endothelial cell
1
1
differentiating adipose-derived stem cell
2
diffuse intrinsic pontine glioma
1
1
diffuse large B-cell lymphoma
1
1
endometrial stromal cell
1
1
endometrial stromal tumor
1
1
endometriosis
2
epidermal stem cell
1
1
erythroid progenitor cell
1
1
fibroblast
1
1
lymphocyte of B lineage (iPSC)
2
medulloblastoma cell line
2
myotube
1
1
natural killer cell
1
1
neuroepithelial stem cell
2
osteosarcoma
1
1
Adipose SGBS cell line (adipocyte)
1
Barrett's epithelial cell line
1
CD8-positive, alpha-beta T cell
1
Chondroid Chordoma
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
Uveal Melanoma
1
cardiac precursors
1
chondroblastoma
1
chronic lymphocytic leukemia
1
colon carcinoma
1
colonic adenoma cell
1
colorectal cancer
1
colorectal carcinoma
1
ecto neural progenitor cell
1
embryonic fibroblast
1
endometrioid carcinoma
1
ependymoma
1
erythroid cell
1
excitatory neuron
1
fibroblast-like synoviocyte
1
hESC cell
1
head and neck squamous cell carcinoma BICR 16
1
head and neck squamous cell carcinoma BICR 6
1
hematopoietic stem cell
1
hepatocellular carcinoma
1
hippocampal neuron
1
lower motor neuron
1
lymphoid progenitor cell
1
melanoma cell line
1
mid-neurogenesis radial glial cells
1
myocyte
1
neuron cell of Hypothalamus (neuron)
1
radial glial cell
1
renal cell carcinoma
1
secretory cell
1
skeletal muscle myoblast
1
skin fibroblast
1
white adipose cell
1
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