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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
226
gene expression
111
target gene predictions
89
differential activity
86
candidate regulatory elements
47
chromatin state
35
variant allelic effects
30
binding sites
24
accessible chromatin
17
histone modifications
2
caQTL
1
eQTL
Date released
161
February, 2021
155
September, 2023
130
September, 2022
49
November, 2021
36
February, 2024
36
March, 2023
16
May, 2021
15
August, 2021
15
June, 2020
12
May, 2020
10
January, 2021
8
February, 2020
6
August, 2018
6
October, 2022
5
March, 2020
3
August, 2017
2
January, 2020
1
February, 2023
1
July, 2020
1
May, 2022
Available data
445
bed bed3+
305
tsv
bigWig
78
txt
44
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
668
Homo sapiens
Biosample type
668
primary cell
41
cell line
40
tissue
24
in vitro differentiated cells
Organ
668
epithelium
291
kidney
235
connective tissue
147
vasculature
100
blood vessel
95
skin of body
86
pancreas
43
liver
43
mammary gland
41
penis
38
musculature of body
37
extraembryonic component
27
artery
27
brain
25
heart
25
lung
20
embryo
19
vein
18
eye
14
bronchus
14
lymphatic vessel
12
bone element
12
intestine
11
bone marrow
10
prostate gland
9
blood
9
bodily fluid
8
esophagus
8
placenta
6
stomach
5
adrenal gland
5
trachea
4
mouth
4
spinal cord
4
uterus
3
gonad
3
large intestine
2
small intestine
2
thyroid gland
1
adipose tissue
1
limb
1
ovary
1
pericardium
1
testis
Project
454
AMP
155
KPMP
49
ENCODE
10
T1D
Genome assembly (visualization)
349
hg19
109
GRCh38
files.file_type!
bigWig
BIOSAMPLE
TYPE
668 results
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Clear Filters
gene expression
target gene predictions
differential activity
candidate regulatory elements
chromatin state
variant allelic effects
binding sites
accessible chromatin
histone modifications
caQTL
eQTL
primary cell
endothelial cell
9
7
2
2
2
1
2
1
epithelial cell of proximal tubule
16
1
2
1
1
1
hepatocyte
8
3
1
1
2
1
1
4
glomerular endothelial cell
14
1
2
1
1
1
endothelial cell of umbilical vein
4
6
5
1
2
1
foreskin keratinocyte
4
11
4
keratinocyte
5
3
3
1
1
2
pancreatic ductal cell
3
3
3
1
1
1
2
bronchial epithelial cell
2
4
2
2
1
1
mammary gland epithelial cell
4
3
3
1
1
dermis blood vessel endothelial cell
2
6
2
endothelial cell of hepatic sinusoid
6
4
glomerular visceral epithelial cell
5
1
2
1
1
mammary epithelial cell
1
3
1
4
1
pancreatic acinar cell
3
3
3
1
pancreatic delta cell
3
3
3
1
epithelial cell of prostate
3
4
2
kidney tubule cell
1
2
3
2
1
pancreatic alpha cell
3
2
3
1
pancreatic beta cell
3
2
3
1
myoepithelial cell of mammary gland
2
4
2
retinal pigment epithelial cell
1
2
1
2
1
1
kidney glomerular epithelial cell
1
1
2
1
1
1
kidney loop of Henle thin ascending limb epithelial cell
7
pulmonary artery endothelial cell
1
2
1
1
1
1
renal cortical epithelial cell
1
1
2
1
1
1
choroid plexus epithelial cell
1
2
1
1
1
dermis lymphatic vessel endothelial cell
2
2
2
epithelial cell of esophagus
1
2
1
2
kidney epithelial cell
1
1
2
1
1
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
Connecting Tubule Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
Medullary Thick Ascending Limb Cell
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Transitional Principal-Intercalated Cell
3
2
iris pigment epithelial cell
1
2
1
1
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
luminal epithelial cell of mammary gland
3
1
1
lung microvascular endothelial cell
1
3
1
non-pigmented ciliary epithelial cell
1
2
1
1
tracheal epithelial cell
2
1
2
brain microvascular endothelial cell
1
2
1
kidney capillary endothelial cell
1
1
1
1
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic endothelial cell
1
3
pancreatic gamma+epsilon cell
1
3
S-shaped body
3
colon epithelial cell
3
cortical cell of adrenal gland
2
1
enterocyte
3
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
meso-epithelial cell
1
1
1
pancreatic A cell
3
pancreatic polypeptide-secreting cell
2
1
type B pancreatic cell
3
type II pneumocyte
2
1
aortic endothelial cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
endothelial cell of coronary artery
1
1
goblet cell
2
kidney inner medulla collecting duct intercalated cell
2
mesothelial cell
1
1
parietal cell
1
1
peptic cell
1
1
renal vesicle
2
thyroid follicular cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Liver fetal (hepatocyte)
1
amniotic epithelial cell
1
basal cell of epidermis
1
bronchial goblet cell
1
cardiac endothelial cell
1
cholangiocyte
1
club cell
1
eccrine cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
epithelial cell of distal tubule
1
foveolar cell of stomach
1
granular cell of epidermis
1
granulosa cell
1
intestinal epithelial cell
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
luminal epithelial cell of prostatic duct
1
myoepithelial cell
1
non keratinizing barrier epithelial cell
1
paneth cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal principal cell
1
respiratory goblet cell
1
small intestine goblet cell
1
stomach neuroendocrine cell
1
type I cell of adrenal cortex
1
type I pneumocyte
1
type II cell of adrenal cortex
1
ureteric bud
1
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