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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
478
gene expression
451
accessible chromatin
209
histone modifications
183
target gene predictions
168
candidate regulatory elements
152
differential activity
100
binding sites
81
variant allelic effects
44
eQTL
37
chromatin state
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
September, 2022
456
February, 2021
333
November, 2021
281
September, 2023
256
May, 2021
152
February, 2024
86
May, 2020
January, 2021
55
March, 2023
53
June, 2020
42
August, 2021
40
May, 2022
37
January, 2022
31
October, 2022
23
January, 2020
19
April, 2020
16
February, 2020
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
5
March, 2020
4
February, 2023
3
November, 2020
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1212
bed bed3+
589
tsv
379
bigWig
108
txt
27
bed bed9+
15
bigBed narrowPeak
4
bed bed9
4
bigBed bed9
Organism
1881
Homo sapiens
Biosample type
1926
primary cell
1810
cell line
1275
tissue
365
in vitro differentiated cells
4
stem cell
Organ
666
epithelium
282
kidney
204
connective tissue
124
vasculature
102
pancreas
84
blood vessel
57
liver
49
skin of body
44
musculature of body
25
mammary gland
23
brain
23
intestine
23
penis
22
heart
22
lung
20
artery
16
extraembryonic component
14
eye
14
vein
11
adrenal gland
11
lymphatic vessel
11
stomach
10
bronchus
10
embryo
9
blood
9
bodily fluid
9
bone element
8
bone marrow
7
esophagus
7
placenta
6
large intestine
5
trachea
5
uterus
4
gonad
4
prostate gland
4
small intestine
3
thyroid gland
2
ovary
1
adipose tissue
1
limb
1
mouth
1
pericardium
1
spinal cord
1
testis
1
thymus
Project
1290
AMP
333
ENCODE
281
KPMP
19
LungMap
3
T1D
Genome assembly (visualization)
1260
hg19
546
GRCh38
month_released!
January, 2021
September, 2022
BIOSAMPLE
TYPE
1926 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
histone modifications
target gene predictions
candidate regulatory elements
differential activity
binding sites
variant allelic effects
eQTL
chromatin state
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
15
17
86
1
1
4
2
1
1
CD8-positive, alpha-beta T cell
3
3
30
4
7
1
endothelial cell
9
14
1
6
2
2
1
2
hepatocyte
13
8
4
2
1
2
fibroblast
16
4
1
6
2
macrophage
2
11
2
3
7
1
epithelial cell of proximal tubule
16
1
1
1
1
smooth muscle cell
1
9
6
2
1
1
CD14-positive monocyte
15
4
pericyte cell
10
9
glomerular endothelial cell
14
2
1
1
pancreatic ductal cell
3
5
2
2
3
1
1
regulatory T cell
7
4
1
2
1
2
B cell
2
6
2
6
endothelial cell of hepatic sinusoid
4
6
6
CD4-positive, alpha-beta T cell
1
3
8
3
common myeloid progenitor, CD34-positive
1
14
T-helper 1 cell
7
3
3
1
astrocyte
1
8
1
3
1
endothelial cell of umbilical vein
2
2
4
2
1
3
osteoblast
2
5
2
1
1
3
pancreatic acinar cell
3
5
2
3
1
foreskin fibroblast
1
2
1
5
4
mammary epithelial cell
1
3
1
3
4
1
pancreatic beta cell
3
5
1
3
1
T-helper 17 cell
7
2
2
1
excitatory neuron
12
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
4
2
1
1
1
1
pancreatic alpha cell
3
4
1
3
1
erythroblast
5
2
2
2
keratinocyte
2
2
3
1
1
1
1
T cell
6
2
2
natural killer cell
2
2
1
1
3
1
pancreatic delta cell
3
2
1
3
1
skeletal muscle myoblast
1
2
1
2
2
1
1
skeletal muscle satellite cell
2
5
1
1
1
mature neutrophil
1
1
7
neutrophil
1
2
2
2
1
1
skeletal muscle fiber
2
5
2
T-helper 2 cell
3
2
2
1
glomerular visceral epithelial cell
5
2
1
glutamatergic neuron
6
2
cardiac muscle cell
1
1
2
1
2
fibroblast of lung
1
3
2
1
foreskin keratinocyte
7
kidney interstitial cell
6
1
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
3
3
1
mesangial cell
5
2
mesenchymal stem cell
1
2
1
1
1
1
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
1
1
retinal pigment epithelial cell
3
1
1
2
type I muscle cell
1
3
1
1
1
type II muscle cell
1
3
1
1
1
type II pneumocyte
4
2
1
T-cell
2
4
alternatively activated macrophage
1
1
4
bronchial epithelial cell
1
1
2
2
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
enterocyte
3
3
gamma-delta T cell
4
2
hepatic stellate cell
1
3
1
1
mast cell
1
1
1
1
1
1
olfactory receptor cell
6
pancreatic stellate cell
2
1
3
peripheral blood mononuclear cell
1
4
1
plasma cell
1
2
1
1
1
trophoblast cell
1
1
1
3
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
1
2
2
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
T follicular helper cell
2
2
1
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
basal cell
2
1
2
central memory CD8-positive, alpha-beta T cell
3
2
effector memory CD8-positive, alpha-beta T cell
3
2
fibroblast of mammary gland
1
1
1
2
fibroblast of pulmonary artery
1
1
1
2
fibroblast of villous mesenchyme
1
1
1
2
gabaergic neuron
3
2
inflammatory macrophage
1
1
3
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
4
1
kidney glomerular epithelial cell
1
2
1
1
kidney loop of Henle thick ascending limb epithelial cell
5
myofibroblast cell
1
1
3
pancreatic endothelial cell
1
1
3
renal cortical epithelial cell
1
2
1
1
tracheal epithelial cell
1
2
2
CD1c-positive myeloid dendritic cell
1
1
1
1
acute myeloid leukemia cell
2
2
adipocyte
1
2
1
adult endothelial progenitor cell
3
1
aortic adventitial fibroblast
1
1
2
blood vessel smooth muscle cell
2
2
cardiac fibroblast
3
1
choroid plexus epithelial cell
1
1
1
1
dermis blood vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
kidney connecting tubule epithelial cell
4
kidney epithelial cell
1
1
1
1
kidney tubule cell
1
2
1
leukocyte
2
2
luminal epithelial cell of mammary gland
2
2
mammary gland epithelial cell
1
1
1
1
mature natural killer cell
2
2
memory T cell
2
2
memory regulatory T cell
2
2
mesothelial cell
2
1
1
naive B cell
1
2
1
nephron progenitor
4
neurosphere
4
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
pancreatic polypeptide-secreting cell
2
1
1
preadipocyte
1
2
1
pulmonary artery endothelial cell
1
1
1
1
renal epithelial cell
1
1
2
smooth muscle cell of the esophagus
2
2
type I pneumocyte
3
1
vascular associated smooth muscle cell
2
2
Cycling Mononuclear Phagocyte
3
Ishikawa
1
1
1
Mast Cell
3
S-shaped body
3
Schwann cell
1
2
Th1 cell
1
1
1
Th17 cell
1
1
1
astrocyte of the cerebellum
1
1
1
astrocyte of the hippocampus
1
1
1
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
epithelial cell of esophagus
1
2
epithelial cell of prostate
1
2
erythroid cell
1
1
1
fibroblast of cardiac tissue
2
1
fibroblast of dermis
1
1
1
foreskin melanocyte
3
glial cell
1
2
goblet cell
1
2
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
meso-epithelial cell
1
1
1
microglial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cel
2
1
naive regulatory T cell
1
2
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic quiescent stellate cell
3
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
schwann cell
2
1
skeletal muscle cell
1
1
1
skin fibroblast
2
1
smooth muscle cell of the brain vasculature
1
1
1
smooth muscle cell of the coronary artery
1
1
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
activated CD4-positive, alpha-beta T cell
1
1
alveolar macrophage
1
1
basal cell of epidermis
1
1
brain microvascular endothelial cell
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
cholangiocyte
1
1
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector memory CD4-positive, alpha-beta T cell
1
1
endothelial cell of coronary artery
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of peridontal ligament
1
1
fibroblast of the aortic adventitia
1
1
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
iris pigment epithelial cell
1
1
kidney capillary endothelial cell
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
lung microvascular endothelial cell
2
luteal cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
megakaryocyte
1
1
melanocyte
1
1
mononuclear cell
1
1
myeloid dendritic cell
1
1
myoepithelial cell
1
1
myoepithelial cell of mammary gland
2
neural cell
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-pigmented ciliary epithelial cell
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
renal principal cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
somatic muscle myotube
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
ureteric bud
1
1
uterine smooth muscle cell
1
1
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
CD8-positive, alpha-beta memory T cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD8-positive, alpha-beta T cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic endothelial cell
1
aortic smooth muscle cell
1
astrocyte of the spinal cord
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
erythrocyte
1
erythroid lineage cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of gingiva
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
fibroblast of the conjunctiva
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
plasmacytoid dendritic cell
1
progenitor cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
stromal cell of bone marrow
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
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