Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
261
accessible chromatin
212
gene expression
206
target gene predictions
193
candidate regulatory elements
181
histone modifications
123
chromatin state
51
differential activity
49
binding sites
39
eQTL
31
variant allelic effects
7
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
279
September, 2022
236
February, 2021
233
May, 2021
152
November, 2021
111
September, 2023
79
February, 2024
68
May, 2020
35
May, 2022
34
January, 2021
34
January, 2022
27
June, 2020
18
August, 2021
13
October, 2022
12
March, 2023
9
April, 2020
9
November, 2022
5
January, 2020
3
February, 2020
2
August, 2017
2
August, 2018
2
February, 2023
1
March, 2024
1
October, 2019
Available data
938
bed bed3+
249
tsv
211
bigWig
94
bed bed9
27
bed bed9+
23
txt
1
bigBed bed9
1
bigBed narrowPeak
Organism
1320
Homo sapiens
Biosample type
2265
tissue
2247
cell line
1365
primary cell
394
in vitro differentiated cells
3
stem cell
Organ
epithelium
309
kidney
connective tissue
169
vasculature
126
pancreas
114
blood vessel
100
skin of body
63
liver
50
musculature of body
46
mammary gland
41
penis
40
extraembryonic component
35
brain
34
lung
31
heart
29
artery
23
eye
intestine
22
embryo
20
vein
17
lymphatic vessel
16
bronchus
14
bone element
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
2
ovary
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
1056
AMP
152
ENCODE
111
KPMP
37
T1D
9
LungMap
Genome assembly (visualization)
1073
hg19
395
GRCh38
organ_slims!
epithelium
intestine
connective tissue
BIOSAMPLE
TYPE
1365 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
differential activity
binding sites
eQTL
variant allelic effects
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
15
2
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
4
3
5
7
30
1
B cell
6
2
10
14
8
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
macrophage
12
2
3
7
3
1
regulatory T cell
5
7
4
5
1
3
1
2
T-helper 1 cell
3
7
3
6
3
1
CD8-positive, alpha-beta memory T cell
7
8
7
T cell
6
4
4
4
2
2
T-helper 17 cell
2
7
3
5
3
1
natural killer cell
3
2
5
6
1
3
1
mononuclear cell
6
7
6
1
smooth muscle cell
9
1
6
1
2
1
trophoblast cell
1
5
7
1
4
T-helper 2 cell
2
3
3
5
3
1
astrocyte
8
1
4
2
1
1
skeletal muscle myoblast
2
1
2
4
1
3
2
1
CD4-positive, alpha-beta T cell
1
3
8
3
neutrophil
3
4
2
2
2
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
2
4
2
1
1
1
1
neurosphere
3
7
3
skeletal muscle satellite cell
5
2
2
2
2
excitatory neuron
12
erythroblast
5
2
2
2
mature neutrophil
1
7
1
memory B cell
4
3
2
naive T cell
3
3
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
3
2
1
skeletal muscle fiber
5
2
2
fibroblast of breast
2
4
2
glutamatergic neuron
6
2
CD1c-positive myeloid dendritic cell
1
1
2
1
1
1
cardiac muscle cell
1
1
2
1
2
kidney interstitial cell
1
6
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
T-cell
2
4
alternatively activated macrophage
1
1
4
astrocyte of the cerebellum
1
1
2
1
1
astrocyte of the hippocampus
1
1
2
1
1
foreskin melanocyte
1
4
1
gamma-delta T cell
2
4
mast cell
1
1
1
1
1
1
naive B cell
3
1
2
olfactory receptor cell
6
peripheral blood mononuclear cell
4
1
1
plasma cell
2
1
1
1
1
skeletal muscle cell
1
1
2
1
1
smooth muscle cell of the brain vasculature
1
1
2
1
1
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
1
2
2
Classical Dendritic Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
M2 Macrophage
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
T follicular helper cell
2
2
1
Vascular Smooth Muscle Cell / Pericyte
3
2
basal cell
2
1
2
central memory CD8-positive, alpha-beta T cell
2
3
effector memory CD8-positive, alpha-beta T cell
2
3
gabaergic neuron
3
2
inflammatory macrophage
1
1
3
inhibitory neuron
5
myofibroblast cell
1
1
3
activated CD4-positive, alpha-beta T cell
1
2
1
acute myeloid leukemia cell
2
2
aortic adventitial fibroblast
1
1
2
astrocyte of the spinal cord
1
2
1
blood vessel smooth muscle cell
2
2
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
leukocyte
2
2
mature natural killer cell
2
2
megakaryocyte
2
2
memory T cell
2
2
memory regulatory T cell
2
2
nephron progenitor
4
pancreatic MUC5B+ductal cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
renal epithelial cell
1
1
2
smooth muscle cell of the esophagus
2
2
vascular associated smooth muscle cell
2
2
Cycling Mononuclear Phagocyte
3
Ishikawa
1
1
1
Mast Cell
3
Schwann cell
1
2
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD8-positive, alpha-beta T cell
1
1
1
blood cell
3
bone marrow cell
2
1
ciliated cell
2
1
enteric neuron
2
1
erythroid cell
1
1
1
glial cell
2
1
kidney cell
3
kidney resident macrophage
3
mammary epithelial cell
3
mammary stem cell
1
1
1
microglial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cel
2
1
naive regulatory T cell
2
1
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
regular cardiac myocyte
1
1
1
schwann cell
2
1
smooth muscle cell of the coronary artery
1
1
1
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
alveolar macrophage
1
1
cardiac muscle myoblast
1
1
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
conventional dendritic cell
1
1
effector memory CD4-positive, alpha-beta T cell
1
1
erythroid progenitor cell
1
1
fetal cardiomyocyte
2
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
leukemic stem cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
melanocyte
1
1
myeloid dendritic cell
1
1
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuron
2
neuronal stem cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
renal proximal tubule cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
uterine smooth muscle cell
1
1
ventricular cardiac muscle cell
1
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
aortic smooth muscle cell
1
bone cell
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
colorectal cancer
1
cytotoxic T cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
erythrocyte
1
erythroid lineage cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
granulocyte
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
islet of Langerhans
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
neural progenitor cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
progenitor cell
1
proximal tubule cells with injury markers
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
See all biosamples
Download