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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
235
gene expression
155
accessible chromatin
98
target gene predictions
89
differential activity
61
candidate regulatory elements
38
variant allelic effects
35
chromatin state
29
binding sites
15
histone modifications
2
caQTL
1
eQTL
Date released
155
September, 2023
147
February, 2021
119
November, 2021
100
September, 2022
59
February, 2024
36
March, 2023
23
August, 2021
20
January, 2021
15
June, 2020
15
May, 2021
13
January, 2020
13
May, 2020
8
February, 2020
7
April, 2020
6
August, 2018
6
October, 2022
5
March, 2020
5
October, 2019
2
August, 2017
2
May, 2022
1
February, 2023
1
July, 2020
Available data
395
bed bed3+
305
tsv
147
bigWig
78
txt
33
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
758
Homo sapiens
Biosample type
758
primary cell
61
tissue
37
cell line
21
in vitro differentiated cells
Organ
819
epithelium
309
kidney
283
connective tissue
169
vasculature
126
pancreas
114
blood vessel
skin of body
63
liver
50
musculature of body
46
mammary gland
41
penis
40
extraembryonic component
35
brain
34
lung
31
heart
29
artery
23
eye
23
intestine
22
embryo
20
vein
17
lymphatic vessel
16
bronchus
bone element
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
2
ovary
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
457
AMP
155
KPMP
119
ENCODE
20
T1D
7
LungMap
Genome assembly (visualization)
430
hg19
199
GRCh38
organ_slims!
skin of body
bone element
BIOSAMPLE
TYPE
758 results
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Clear Filters
gene expression
accessible chromatin
target gene predictions
differential activity
candidate regulatory elements
variant allelic effects
chromatin state
binding sites
histone modifications
caQTL
eQTL
primary cell
endothelial cell
9
15
7
2
2
1
2
1
hepatocyte
13
8
3
1
2
1
1
4
epithelial cell of proximal tubule
16
1
1
2
1
1
1
glomerular endothelial cell
14
2
1
2
1
1
endothelial cell of umbilical vein
2
4
6
1
5
2
pancreatic ductal cell
3
6
3
3
1
1
2
pancreatic beta cell
3
8
3
3
1
pancreatic alpha cell
3
7
3
3
1
endothelial cell of hepatic sinusoid
4
6
6
pancreatic acinar cell
3
6
3
3
1
pancreatic delta cell
3
5
4
3
1
mammary gland epithelial cell
1
4
3
1
3
1
bronchial epithelial cell
1
2
4
2
2
1
glomerular visceral epithelial cell
5
2
1
2
1
kidney tubule cell
1
2
2
3
2
mammary epithelial cell
1
1
3
1
4
retinal pigment epithelial cell
3
1
2
1
2
1
epithelial cell of prostate
3
4
2
kidney glomerular epithelial cell
1
2
1
2
1
1
myoepithelial cell of mammary gland
2
4
2
renal cortical epithelial cell
1
2
1
2
1
1
choroid plexus epithelial cell
1
1
2
1
1
1
kidney epithelial cell
1
1
1
2
1
1
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
2
3
1
1
pulmonary artery endothelial cell
1
1
2
1
1
1
type II pneumocyte
4
2
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
enterocyte
3
3
epithelial cell of esophagus
1
2
2
1
pancreatic polypeptide-secreting cell
2
2
1
1
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
Connecting Tubule Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
Medullary Thick Ascending Limb Cell
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Transitional Principal-Intercalated Cell
3
2
brain microvascular endothelial cell
1
1
2
1
iris pigment epithelial cell
1
1
2
1
kidney capillary endothelial cell
1
1
1
1
1
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
4
1
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
1
3
1
non-pigmented ciliary epithelial cell
1
1
2
1
pancreatic endothelial cell
1
1
3
tracheal epithelial cell
1
2
2
aortic endothelial cell
2
1
1
endothelial cell of lymphatic vessel
3
1
kidney connecting tubule epithelial cell
4
mesothelial cell
2
1
1
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
type I pneumocyte
3
1
S-shaped body
3
club cell
2
1
endocardial cell
2
1
epithelial cell of amnion
1
1
1
goblet cell
1
2
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
meso-epithelial cell
1
1
1
pancreatic A cell
3
parietal cell
1
1
1
peptic cell
1
1
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
capillary endothelial cell
2
cardiac endothelial cell
1
1
cholangiocyte
1
1
eccrine cell
1
1
endothelial cell of coronary artery
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
foveolar cell of stomach
1
1
kidney inner medulla collecting duct intercalated cell
2
myoepithelial cell
1
1
non keratinizing barrier epithelial cell
1
1
paneth cell
1
1
renal principal cell
1
1
renal vesicle
2
respiratory goblet cell
1
1
small intestine goblet cell
1
1
stomach neuroendocrine cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
ureteric bud
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Liver fetal (hepatocyte)
1
amniotic epithelial cell
1
bronchial goblet cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
gastric goblet cell
1
granulosa cell
1
intestinal epithelial cell
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
neuroendocrine cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
See all biosamples
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