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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
325
accessible chromatin
258
target gene predictions
243
gene expression
242
candidate regulatory elements
193
histone modifications
150
chromatin state
70
binding sites
63
differential activity
45
eQTL
42
variant allelic effects
9
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
354
September, 2022
292
February, 2021
240
May, 2021
206
November, 2021
126
September, 2023
92
February, 2024
73
May, 2020
38
June, 2020
38
May, 2022
37
January, 2022
36
January, 2021
25
October, 2022
19
August, 2021
19
March, 2023
12
April, 2020
10
January, 2020
9
November, 2022
8
February, 2020
3
August, 2017
3
August, 2018
3
February, 2023
3
November, 2020
2
May, 2024
2
October, 2019
1
June, 2021
1
March, 2024
Available data
1150
bed bed3+
286
tsv
259
bigWig
120
bed bed9
30
txt
27
bed bed9+
2
bigBed bed9
2
bigBed narrowPeak
Organism
1607
Homo sapiens
Biosample type
2590
tissue
2309
cell line
1652
primary cell
444
in vitro differentiated cells
4
stem cell
Organ
epithelium
309
kidney
283
connective tissue
169
vasculature
126
pancreas
114
blood vessel
100
skin of body
63
liver
50
musculature of body
46
mammary gland
41
penis
40
extraembryonic component
35
brain
34
lung
31
heart
29
artery
23
eye
23
intestine
22
embryo
vein
17
lymphatic vessel
16
bronchus
14
bone element
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
2
ovary
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
1267
AMP
206
ENCODE
126
KPMP
39
T1D
12
LungMap
2
community
Genome assembly (visualization)
1312
hg19
489
GRCh38
organ_slims!
vein
epithelium
BIOSAMPLE
TYPE
1652 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
gene expression
candidate regulatory elements
histone modifications
chromatin state
binding sites
differential activity
eQTL
variant allelic effects
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
2
15
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
4
5
3
7
30
1
B cell
6
10
2
14
8
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
fibroblast
16
4
1
2
6
macrophage
12
3
2
7
3
1
regulatory T cell
5
4
7
5
1
3
1
2
T-helper 1 cell
3
3
7
6
3
1
CD8-positive, alpha-beta memory T cell
7
8
7
T cell
6
4
4
4
2
2
pericyte cell
10
10
1
1
T-helper 17 cell
2
3
7
5
3
1
natural killer cell
3
5
2
6
1
3
1
mononuclear cell
6
7
6
1
smooth muscle cell
9
6
1
1
2
1
trophoblast cell
1
5
7
1
4
T-helper 2 cell
2
3
3
5
3
1
astrocyte
8
4
1
2
1
1
osteoblast
5
2
2
2
2
1
3
fibroblast of lung
4
6
4
2
foreskin fibroblast
1
2
6
2
1
4
skeletal muscle myoblast
2
2
1
4
1
3
2
1
CD4-positive, alpha-beta T cell
1
3
8
3
neutrophil
3
4
2
2
2
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
1
4
2
1
1
1
1
neurosphere
3
7
3
skeletal muscle satellite cell
5
2
2
2
2
excitatory neuron
12
fibroblast of cardiac tissue
2
4
3
3
fibroblast of dermis
4
4
3
1
erythroblast
5
2
2
2
hepatic stellate cell
3
1
1
1
1
1
1
mature neutrophil
1
7
1
memory B cell
4
2
3
naive T cell
3
3
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
3
1
skeletal muscle fiber
5
2
2
skin fibroblast
2
3
2
2
fibroblast of breast
2
4
2
fibroblast of mammary gland
1
1
2
1
1
2
fibroblast of pulmonary artery
1
1
2
1
1
2
fibroblast of villous mesenchyme
1
1
2
1
1
2
glutamatergic neuron
6
2
pancreatic stellate cell
2
1
2
3
CD1c-positive myeloid dendritic cell
1
1
2
1
1
1
cardiac muscle cell
1
1
2
1
2
kidney interstitial cell
1
6
mesangial cell
2
5
mesenchymal stem cell
2
1
1
1
1
1
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
T-cell
2
4
alternatively activated macrophage
1
1
4
astrocyte of the cerebellum
1
1
2
1
1
astrocyte of the hippocampus
1
1
2
1
1
foreskin melanocyte
1
4
1
gamma-delta T cell
2
4
mast cell
1
1
1
1
1
1
naive B cell
3
2
1
olfactory receptor cell
6
peripheral blood mononuclear cell
4
1
1
plasma cell
2
1
1
1
1
skeletal muscle cell
1
1
2
1
1
smooth muscle cell of the brain vasculature
1
1
2
1
1
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
1
2
2
Classical Dendritic Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Fibroblast
3
2
M2 Macrophage
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
T follicular helper cell
2
2
1
Vascular Smooth Muscle Cell / Pericyte
3
2
basal cell
2
1
2
central memory CD8-positive, alpha-beta T cell
2
3
effector memory CD8-positive, alpha-beta T cell
2
3
fibroblast of peridontal ligament
1
1
2
1
fibroblast of the aortic adventitia
1
2
1
1
gabaergic neuron
3
2
inflammatory macrophage
1
1
3
inhibitory neuron
5
myofibroblast cell
1
1
3
activated CD4-positive, alpha-beta T cell
1
2
1
acute myeloid leukemia cell
2
2
adipocyte
2
1
1
adult endothelial progenitor cell
1
3
aortic adventitial fibroblast
1
1
2
astrocyte of the spinal cord
1
2
1
blood vessel smooth muscle cell
2
2
cardiac fibroblast
3
1
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
enteric smooth muscle cell
2
2
fibroblast of gingiva
1
2
1
fibroblast of the conjunctiva
1
2
1
leukocyte
2
2
mature natural killer cell
2
2
megakaryocyte
2
2
memory T cell
2
2
memory regulatory T cell
2
2
nephron progenitor
4
pancreatic MUC5B+ductal cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
preadipocyte
1
2
1
renal epithelial cell
1
1
2
smooth muscle cell of the esophagus
2
2
stromal cell of bone marrow
1
2
1
vascular associated smooth muscle cell
2
2
Cycling Mononuclear Phagocyte
3
Ishikawa
1
1
1
Mast Cell
3
Schwann cell
1
2
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD8-positive, alpha-beta T cell
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
ciliated cell
2
1
enteric neuron
2
1
erythroid cell
1
1
1
glial cell
2
1
kidney cell
3
kidney resident macrophage
3
mammary epithelial cell
3
mammary stem cell
1
1
1
microglial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cel
2
1
naive regulatory T cell
2
1
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic quiescent stellate cell
3
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
schwann cell
2
1
smooth muscle cell of the coronary artery
1
1
1
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
alveolar macrophage
1
1
articular chondrocyte
2
cardiac muscle myoblast
1
1
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
effector memory CD4-positive, alpha-beta T cell
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
leukemic stem cell
1
1
luteal cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
melanocyte
1
1
myeloid dendritic cell
1
1
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuron
2
neuronal stem cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
renal proximal tubule cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stromal cell
1
1
uterine smooth muscle cell
1
1
ventricular cardiac muscle cell
1
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
aortic smooth muscle cell
1
bone cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
colorectal cancer
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
erythrocyte
1
erythroid lineage cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
granulocyte
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
islet of Langerhans
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
neural progenitor cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
pericardium fibroblast
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
progenitor cell
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
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