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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1264
candidate regulatory elements
917
target gene predictions
702
chromatin state
679
binding sites
673
histone modifications
360
accessible chromatin
131
gene expression
125
eQTL
74
Fine-mapped variants
52
variant allelic effects
15
differential activity
4
variant to gene
3
pQTL
2
caQTL
2
sQTL
1
other
Date released
609
February, 2021
68
October, 2022
1
August, 2021
1
March, 2020
Available data
679
bed bed3+
Organism
679
Homo sapiens
Biosample type
643
cell line
100
primary cell
38
in vitro differentiated cells
36
tissue
Organ
44
bodily fluid
43
blood
14
brain
12
embryo
12
lymph node
10
epithelium
9
skin of body
8
prostate gland
7
connective tissue
7
lung
6
bone element
6
intestine
6
kidney
6
large intestine
6
liver
4
eye
4
mammary gland
4
pancreas
4
vasculature
3
gonad
3
heart
3
testis
3
uterus
2
adipose tissue
2
blood vessel
2
limb
2
musculature of body
2
spinal cord
1
artery
1
extraembryonic component
1
lymphatic vessel
1
penis
1
placenta
1
spleen
1
thymus
1
vein
Project
679
AMP
Genome assembly (visualization)
678
hg19
1
hg18
BIOSAMPLE
TYPE
679 results
search-icon
table-tab-icon
Clear Filters
binding sites
cell line
breast cancer cell
9
melanoma
7
fibroblast cell line
6
prostate cancer cell line
5
glioblastoma multiforme cancer stem cell
4
neural progenitor cell
4
neuroblastoma cell
4
HepG2
3
MCF-7
3
Tumor-derived cell line
3
acute myeloid leukemia
3
dermal fibroblast
3
keratinocyte
3
liposarcoma
3
synovial sarcoma cell
3
triple-negative breast cancer
3
A549
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Burkitt's lymphoma
2
COLO-320 cell
2
Caco-2 cell
2
DND-41 cell
2
ECC-1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM06990
2
GM08714
2
GM10847
2
GM12801
2
GM12864
2
GM12865
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM12878
2
GM12891
2
GM12892
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM19238
2
GM19239
2
GM19240
2
H1-hESC
2
HAC cell
2
HBMEC cell
2
HCT-116 cell
2
HEK293
2
HEK293-T-REx cell
2
HL-60
2
HS-SY-2 cell
2
IMR-90
2
Jurkat
2
K562
2
Mantle cell lymphoma
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
PANC-1 cell
2
PFSK-1 cell
2
RS4-11 cell
2
Raji cell
2
Rh-4 cell
2
SAEC
2
SH-SY5Y cell
2
SK-MEL-5 cell
2
SK-N-MC
2
SK-N-SH_RA
2
SUM-185PE cell
2
T-47D cell
2
T-lymphocyte
2
U-87 MG
2
U2OS
2
WERI-Rb-1
2
WI-38 cell
2
adult acute myeloid leukemia
2
cardiac muscle cell
2
chronic myeloid leukemia cell
2
diffuse intrinsic pontine glioma
2
embryonic stem cell
2
esophageal epithelial cell
2
esophageal squamous cell carcinoma
2
gastric cancer cell
2
glioblastoma cell
2
immortal neural cell line cell
2
lung fibroblast cell line
2
lymphoblastoid cell line
2
metastatic melanoma
2
pancreatic cancer cell
2
pancreatic cell line
2
prostate derived cell line
2
spinal cord
2
143B
1
22Rv1
1
451Lu cell
1
501A
1
697 cell
1
769-P cell
1
786-O cell
1
A-1847 cell
1
A-375 cell
1
A-498 cell
1
A-673 cell
1
A2780 cell
1
AGS cell
1
ALL-SIL cell
1
AsPC-1 cell
1
B-CPAP cell
1
B-cell acute lymphoblastic leukemia
1
B-cell lymphoma cell
1
B-lymphoblast
1
B-lymphoblastoid cell line
1
B-lymphocyte
1
BCBL-1 cell
1
BEAS-2B cell
1
BEL-7402 cell
1
BG03
1
BJAB cell
1
BL-2 cell
1
BL-41 cell
1
BPE cell
1
BT-20 cell
1
BT-474 cell
1
BT-549 cell
1
BeWo cell
1
BxPC-3 cell
1
C666-1 cell
1
CA46 cell
1
CAL-51 cell
1
CCLP-1 cell
1
CCRF-CEM cell
1
CFPAC-1 cell
1
CHL-1 cell
1
CHLA-90 cell
1
CHP-134 cell
1
CMK
1
COLO 741 cell
1
COLO-800 cell
1
COLO-829 cell
1
COLO205
1
CTV-1 cell
1
CaSki cell
1
Caki-1 cell
1
Calu-1 cell
1
Calu-3 cell
1
D283 Med cell
1
D341 Med cell
1
DK cell
1
DLD-1 cell
1
DOHH-2 cell
1
DU 145 cell
1
Daoy
1
Daudi
1
Detroit562
1
EM-3 cell
1
EOL-1 cell
1
EndoC_BH1
1
FaDu cell
1
Farage cell
1
G-401 cell
1
GM00011
1
GM06170
1
GM10248
1
GM10266
1
GM12866
1
GM12867
1
GM12868
1
GM12869
1
GM12870
1
GM12871
1
GM13976
1
GM13977
1
GM17212
1
GM20000
1
GM23248
1
GP5d
1
GRANTA-519 cell
1
HAP-1
1
HBL-1 cell
1
HCC-827 cell
1
HCC-95 cell
1
HCC1143 cell
1
HCC1395 cell
1
HCC1428 cell
1
HCC1599 cell
1
HCC1806 cell
1
HCC1937 cell
1
HCC1954 cell
1
HCC2157 cell
1
HCC3153 cell
1
HCC70 cell
1
HCE-T cell
1
HCT-15 cell
1
HEL 92.1.7 cell
1
HEL cell
1
HFF-Myc
1
HGPS cell
1
HK-2 cell
1
HOS cell
1
HPB-ALL cell
1
HT
1
HT-1080 cell
1
HT-29
1
HUES6
1
HUES64
1
HUES8
1
HeLa cell
1
HeLa-S3
1
Hep 3B cell
1
Hepa-RG cell
1
Hs 578T cell
1
Hs 68 cell
1
HuCCT-1 cell
1
HuH-7
1
HuT 78 cell
1
IB4 cell
1
IMEC cell
1
IMR-5 cell
1
JB6 cell
1
JHU-029 cell
1
JURL-MK1 cell
1
JeKo-1
1
KARPAS-422 cell
1
KATO III cell
1
KBM-7
1
KELLY
1
KG-1 cell
1
KMS-11 cell
1
KMS-28BM
1
KMS-28PE
1
KNS-62
1
KOPT-K1 cell
1
KU812 cell
1
KURAMOCHI cell
1
KYSE-150 cell
1
KYSE-70 cell
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
LAN-1 cell
1
LAN-6 cell
1
LAPC-4 cell
1
LHCN-M2
1
LK-2
1
LN-229 cell
1
LNCAP
1
LOX-IMVI cell
1
LP1
1
LS 174T cell
1
LS 180 cell
1
LY2 cell
1
LoVo cell
1
Loucy cell
1
M-07e cell
1
MCF 10A cell
1
MCF-12A cell
1
MCF10A-Er-Src cell
1
MDA PCa 2b cell
1
MDA-MB-134-VI cell
1
MDA-MB-157 cell
1
MDA-MB-175-VII cell
1
MDA-MB-231 cell
1
MDA-MB-361 cell
1
MDA-MB-436 cell
1
MDA-MB-453 cell
1
MDA-MB-468 cell
1
ME-1
1
ME-180 cell
1
MEG-01 cell
1
MG63
1
MIA PaCa-2 cell
1
MKN-28 cell
1
ML-2 cell
1
MM.1S
1
MM1-R cell
1
MOLM-13 cell
1
MOLM-14 cell
1
MOLT-4 cell
1
MRC-5 cell
1
MS1 cell
1
MSTO-211H cell
1
MV-4-11 cell
1
Malme-3 cell
1
Merkel cell skin cancer
1
Myoblasts
1
NALM-6 cell
1
NAMALWA cell
1
NB-1643 cell
1
NB-4 cell
1
NB-69 cell
1
NB4
1
NCCIT cell
1
NCI-H1048 cell
1
NCI-H1299 cell
1
NCI-H1703 cell
1
NCI-H1819 cell
1
NCI-H1975 cell
1
NCI-H2052 cell
1
NCI-H2087 cell
1
NCI-H2107 cell
1
NCI-H2171 cell
1
NCI-H23 cell
1
NCI-H295R cell
1
NCI-H3122 cell
1
NCI-H358 cell
1
NCI-H441 cell
1
NCI-H460 cell
1
NCI-H520 cell
1
NCI-H524 cell
1
NCI-H526 cell
1
NCI-H660 cell
1
NCI-H69 cell
1
NCI-H82 cell
1
NCI-H838 cell
1
NCI-H889 cell
1
NCI-H929 cell
1
NCI-N87 cell
1
NGP cell
1
NHBE cell
1
NHDF cell
1
NOMO-1 cell
1
NTERA-2 cell
1
OCI-AML3
1
OCI-LY-19 cell
1
OCI-LY1
1
OCI-LY10
1
OCI-LY3
1
OCI-LY7
1
OECM-1 cell
1
OS-RC-2 cell
1
OVCA-429 cell
1
OVCAR-3 cell
1
OVCAR-5 cell
1
OVCAR8
1
OVSAHO cell
1
Ovarian Granulosa Cell Tumor
1
P493-6 cell
1
PA-TU-8988T cell
1
PBMC cell line
1
PC-3
1
PC-3M cell
1
PC-9
1
PEO1
1
PNT1A cell
1
Pfeiffer
1
RC-K8 cell
1
RCH-ACV cell
1
RD cell
1
REC-1 cell
1
REH cell
1
RH-30 cell
1
RH-41 cell
1
RKO
1
RL95-2 cell
1
RMG-I cell
1
RPMI8226
1
RT-112 cell
1
RT4 cell
1
RWPE1
1
Ramos
1
Rh-18 cell
1
Rhabdomyosarcoma
1
SCC-25 cell
1
SCC-9 cell
1
SEM
1
SET-2
1
SF268 cell
1
SGC-7901 cell
1
SH-EP cell
1
SHI-1 cell
1
SJSA1
1
SK-BR-3 cell
1
SK-MEL-28
1
SK-N-AS cell
1
SK-N-FI cell
1
SK-N-SH
1
SK-UT-1 cell
1
SMMC-7721 cell
1
SNU-216 cell
1
SNU-398 cell
1
SU-DHL-1 cell
1
SU-DHL-2
1
SU-DHL-4
1
SUDHL10
1
SUDHL5
1
SUDHL6
1
SUIT-2
1
SUM-1315MO2 cell
1
SUM-149PT cell
1
SUM-159PT cell
1
SUM-229PE cell
1
SUM-44PE cell
1
SUP-B15 cell
1
SW 1271 cell
1
SW 620 cell
1
SW480
1
Saos-2 cell
1
SiHa cell
1
T98G cell
1
TALL-1 cell
1
TC-32 cell
1
TC-71 cell
1
TF-1 cell
1
THP-1
1
TMD8 cell
1
TOV-21G cell
1
TT cell
1
Toledo
1
U-251 MG cell
1
U-266 cell
1
U-2932
1
U937
1
UACC-257
1
UACC-62 cell
1
UACC-812 cell
1
UO-31 cell
1
Uveal Melanoma
1
VCaP cell
1
VMRC-RCW cell
1
WA-09 cell
1
WSU-DLCL2 cell
1
Xenograft
1
Z-12 cell
1
ZR-75-1 cell
1
ZR-75-30 cell
1
acute lymphoblastic leukemia
1
adenoid cystic carcinoma
1
adipocyte cell line
1
adipose tissue derived mesenchymal stem cell
1
adult T-cell lymphoma cell
1
bladder carcinoma
1
blastic plasmacytoid dendritic cell neoplasm
1
cardiac myocyte cell derived cell line
1
cardiomyocyte cell line
1
chondrocyte
1
choroid plexus epithelial cell
1
chronic lymphocytic leukemia cell
1
colon cancer cell line
1
coronary artery smooth muscle cell
1
decidual stromal cell
1
dermal microvascular endothelial cell
1
dermis lymphatic vessel endothelial cell
1
diffuse large B-cell lymphoma
1
ectodermal cell
1
embryonal carcinoma
1
endodermal cell
1
epithelial cell of prostate
1
epithelial ovarian cancer cell
1
fibroblast of cardiac tissue
1
fibrosarcoma
1
gastric carcinoma
1
gastrointestinal stromal tumor cell
1
glial cell
1
glioma cell
1
hES BG01V cell
1
hESC H9
1
hESC cell
1
hTERT-HME1 cell
1
helper T-lymphocyte
1
hematopoietic cell
1
hepatic stellate cell
1
high grade ovarian serous adenocarcinoma
1
human aortic endothelial cell
1
human ovarian cancer cell line cell
1
iPSC derived cell line
1
immortal epidermal cell line cell
1
immortal megakaryocyte-erythroid progenitor cell line cell
1
leiomyoma cell
1
leukemia cell line
1
leukemic stem cell
1
lymphoma cell
1
macrophage
1
malignant rhabdoid tumour
1
mesodermal cell
1
multiple myeloma cell line
1
myeloma cell
1
neural crest cell line
1
neurofibromatosis
1
oral cancer cell line
1
osteosarcoma
1
pancreatic adenosquamous carcinoma
1
pancreatic ductal cell
1
pre-B-lymphocyte cell line
1
precursor T-cell lymphoblastic leukemia-lymphoma
1
primordial germ cell
1
progenitor cell of endocrine pancreas
1
prostate carcinoma
1
renal proximal tubule epithelial cell
1
retinal cell
1
skin fibroblast
1
small cell lung cancer cell
1
small cell lung carcinoma
1
smooth muscle cell of the coronary artery
1
squamous cell lung carcinoma
1
testicular seminoma
1
umbilical cord mesenchymal stem cell line cell
1
vein endothelial cell
1
tissue
islet of Langerhans
2
prostate gland
2
adipose tissue
1
brain
1
breast carcinoma
1
caput epididymis
1
colon
1
cortex of kidney
1
endometrium
1
endometrium cancer
1
epididymis
1
fallopian tube
1
first pancreatic bud
1
heart
1
kidney
1
kidney epithelium
1
layer of hippocampus
1
liver
1
mammary gland
1
medulloblastoma
1
midbrain
1
pancreas
1
placenta
1
prefrontal cortex
1
renal connecting tubule
1
respiratory system smooth muscle
1
retina
1
skin of forearm
1
skin of prepuce of penis
1
spleen
1
testis
1
thymus
1
trophoblast
1
upper lobe of left lung
1
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