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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1016
candidate regulatory elements
583
target gene predictions
555
chromatin state
accessible chromatin
184
gene expression
183
histone modifications
115
eQTL
74
Fine-mapped variants
74
binding sites
54
variant allelic effects
5
differential activity
4
variant to gene
3
pQTL
2
caQTL
2
sQTL
1
other
1
representative DNase hypersensitivity sites
Date released
1481
September, 2022
822
February, 2021
114
March, 2020
64
May, 2021
60
August, 2021
60
May, 2020
56
January, 2022
48
February, 2020
40
February, 2024
28
March, 2024
23
August, 2017
22
January, 2020
9
May, 2019
8
April, 2019
6
March, 2023
4
September, 2023
3
October, 2019
2
January, 2018
1
August, 2020
1
August, 2022
1
February, 2023
1
May, 2022
1
November, 2019
Available data
1938
bed bed3+
526
bed bed9
287
tsv
36
bigBed bed9
24
csv
2
bigWig
1
bam
Organism
2854
Homo sapiens
Biosample type
2455
tissue
2189
cell line
1985
primary cell
401
in vitro differentiated cells
4
stem cell
Organ
329
brain
300
musculature of body
280
kidney
226
intestine
217
limb
198
heart
179
lung
131
large intestine
125
connective tissue
105
stomach
100
extraembryonic component
97
pancreas
79
adipose tissue
79
small intestine
77
vasculature
76
blood vessel
63
embryo
61
adrenal gland
61
liver
60
ureter
59
placenta
47
thymus
46
epithelium
37
gonad
36
artery
35
spinal cord
33
esophagus
32
spleen
30
skin of body
26
eye
22
nerve
20
ovary
19
thyroid gland
17
lymphoid tissue
17
testis
14
bone element
14
prostate gland
12
breast
12
uterus
10
mouth
10
skeleton
10
vagina
9
tongue
9
urinary bladder
6
penis
4
bodily fluid
4
mammary gland
3
blood
3
nose
3
pituitary gland
1
lymphatic vessel
1
vein
Project
2851
AMP
5
ITG
Genome assembly (visualization)
2586
hg19
693
GRCh38
3
hg18
annotation_type!
accessible chromatin
BIOSAMPLE
TYPE
2856 results
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Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
gene expression
histone modifications
eQTL
Fine-mapped variants
binding sites
variant allelic effects
differential activity
variant to gene
pQTL
caQTL
sQTL
other
representative DNase hypersensitivity sites
tissue
heart
37
20
21
3
1
1
2
stomach
40
21
19
1
1
1
brain
29
16
18
1
3
2
1
1
kidney
29
14
16
7
2
1
1
1
lung
33
17
16
1
1
muscle of arm
33
16
16
1
small intestine
29
17
15
1
adrenal gland
28
17
14
1
1
placenta
26
15
14
2
1
1
muscle of leg
27
14
15
large intestine
27
14
13
1
muscle of back
28
13
13
left lung
26
13
13
thymus
20
14
11
1
1
liver
13
10
9
1
2
7
1
1
1
right lung
22
11
11
right kidney
20
10
10
1
renal cortex interstitium
20
9
9
1
islet of Langerhans
1
3
11
1
13
2
2
1
2
2
renal pelvis
19
9
9
1
left kidney
18
9
9
spleen
15
8
6
1
1
1
heart left ventricle
11
7
8
1
1
1
2
adipose tissue
7
8
6
3
4
1
1
spinal cord
14
8
7
1
body of pancreas
8
5
4
2
1
3
1
sigmoid colon
10
7
5
tibial nerve
6
3
4
2
2
3
2
caudate nucleus
5
3
4
1
1
2
3
1
ovary
8
6
4
1
1
psoas muscle
7
8
4
subcutaneous adipose tissue
2
1
5
6
3
1
1
coronary artery
3
3
3
1
2
3
2
1
heart right ventricle
6
5
5
1
1
substantia nigra
5
2
3
1
1
3
3
thyroid gland
8
5
4
1
transverse colon
8
5
4
1
gastrocnemius medialis
8
5
4
muscle of trunk
8
5
4
pancreas
5
5
3
1
1
1
1
retina
6
3
3
1
1
1
1
1
testis
7
3
3
1
1
1
1
chorionic villus
8
4
4
layer of hippocampus
6
3
4
1
1
1
omental fat pad
5
2
2
2
2
3
right atrium auricular region
3
2
2
2
2
3
2
skeletal muscle tissue
6
3
3
1
1
2
tibial artery
3
2
3
1
2
3
2
ascending aorta
4
2
3
1
1
3
1
cerebellum
3
2
2
2
1
2
3
endocrine pancreas
7
4
4
upper lobe of left lung
7
3
3
1
1
frontal cortex
2
2
2
2
2
3
1
temporal lobe
5
2
5
1
1
Peyer's patch
7
3
3
aorta
4
4
4
1
prostate gland
4
2
2
2
1
2
putamen
2
1
1
1
1
3
3
1
left cardiac atrium
2
1
6
1
1
left renal cortex interstitium
6
2
2
1
left renal pelvis
6
2
2
1
right renal pelvis
6
2
2
1
Ammon's horn
2
2
1
1
1
3
angular gyrus
4
2
4
breast epithelium
5
3
2
colonic mucosa
4
2
3
1
esophagus
4
3
2
1
esophagus muscularis mucosa
5
2
2
1
esophagus squamous epithelium
6
2
2
lower leg skin
6
2
2
right renal cortex interstitium
5
2
2
1
thoracic aorta
4
2
3
1
trophoblast
4
3
2
1
vagina
4
2
2
1
1
chorion membrane
3
3
3
cingulate gyrus
4
2
3
duodenal mucosa
4
2
3
mucosa of rectum
4
2
3
parathyroid adenoma
5
2
2
right lobe of liver
2
1
1
1
1
3
stomach smooth muscle
4
2
3
eye
4
2
2
muscle layer of colon
4
2
2
muscle layer of duodenum
4
2
2
right cardiac atrium
2
2
3
1
tongue
4
2
2
uterus
3
2
1
1
1
amygdala
1
1
2
3
gastroesophageal sphincter
5
1
1
hypothalamus
1
1
2
3
limb
3
2
2
nucleus accumbens
1
1
2
3
urinary bladder
3
2
2
Brodmann (1909) area 46
2
2
2
anterior cingulate cortex
1
2
3
cerebellum (Hemisphere)
1
1
3
1
globus pallidus
2
1
1
1
1
midbrain
1
1
1
1
1
1
occipital lobe
1
1
1
1
1
1
skin of body
1
1
1
3
subcutaneous abdominal adipose tissue
5
1
C1 segment of cervical spinal cord
1
1
3
cartilage tissue
1
2
2
gastrocnemius medialis(Muscle - Skeletal)
1
1
3
germinal matrix
2
1
2
left ventricle myocardium
1
1
3
middle frontal gyrus
2
1
1
1
superior temporal gyrus
1
1
1
1
1
umbilical cord
2
1
1
1
amnion
2
1
1
bone tissue
4
cerebellar cortex
2
1
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
3
femur
2
1
1
medulla oblongata
1
1
1
1
mucosa of stomach
2
1
1
pons
1
1
1
1
rectum smooth muscle tissue
1
1
2
visceral abdominal adipose tissue
2
1
1
arm bone
1
1
1
cortex of kidney
1
1
1
dorsolateral prefrontal cortex
1
1
1
embryonic facial prominence
1
1
1
germinal center
1
1
1
inferior parietal cortex
1
1
1
leg bone
1
1
1
suprapubic skin
3
muscle of leg
2
blood
2
breast carcinoma
1
1
chorion
2
endometrium cancer
1
1
fallopian tube
1
1
first pancreatic bud
1
1
kidney epithelium
1
1
mammary gland
1
1
middle frontal area 46
2
minor salivary gland
1
1
pituitary gland
1
1
placental basal plate
2
prefrontal cortex
1
1
respiratory system smooth muscle
1
1
skeletal muscle
1
1
skin of forearm
1
1
skin of prepuce of penis
1
1
tissue
2
hindlimb muscle
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
forelimb muscle
1
frontal pole
1
gastric (mucosa of stomach)
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
mitral valve
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
parietal lobe
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
prostate
1
pulmonary valve
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal connecting tubule
1
renal glomerulus
1
right arm bone
1
septal nuclear complex
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
synovial joint
1
temporal pole
1
thalamic complex
1
thyroid
1
tricuspid valve
1
white adipose tissue
1
white matter
1
whole blood
1
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
10
10
1
1
1
neural progenitor cell
5
5
4
7
15
adipocyte
4
6
6
1
1
1
cardiomyocytes
11
mesenchymal stem cell
3
3
2
1
1
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
9
T-cell acute lymphoblastic leukemia
5
3
cardiomyocytes (cardiac muscle cell)
3
4
1
embryonic stem cell
1
5
1
1
endodermal cell
4
2
2
neuroblastoma cell line
6
2
mesendoderm
2
2
1
1
1
mesodermal cell
4
1
1
1
neuronal stem cell
2
1
2
2
cardiac muscle cell
4
1
1
cardiac precursors (cardiac muscle cell)
1
4
1
dendritic cell
6
muscle cell
2
2
2
bipolar neuron
2
2
1
neural cell
3
1
1
smooth muscle cell
2
1
1
1
trophoblast cell
2
2
1
colon adenocarcinoma
2
2
ectodermal cell
2
1
1
hepatocyte
2
1
1
islet precursor cell
2
1
1
neuron
2
1
1
rhabdomyosarcoma cell
4
cardiac mesoderm primordium
1
1
1
esophageal adenocarcinoma
2
1
hepatocyte(AFP)
3
olfactory neurosphere cell line
1
1
1
pancreatic ductal adenocarcinoma
3
pancreatic ductal cell
3
B cell
2
BICR 31
1
1
CD8-Positive T-Lymphocytes
1
1
EAhy 926 cell
1
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T-lymphoma cell line
1
1
Th1 cell
1
1
adipose-derived stem cell
1
1
atypical teratoid rhabdoid tumor
1
1
cardiac myoblast
2
cardiovascular progenitor cell
2
chronic myelomonocytic leukemia
1
1
colorectal adenocarcinoma
1
1
diffuse intrinsic pontine glioma
1
1
diffuse large B-cell lymphoma
1
1
endometrial stromal cell
1
1
endometrial stromal tumor
1
1
endometriosis
2
epidermal stem cell
1
1
erythroid progenitor cell
1
1
fibroblast
1
1
foreskin keratinocyte
1
1
foreskin melanocyte
1
1
iPS DF 4.7 Cell Line
1
1
lymphocyte of B lineage (iPSC)
2
mammary gland epithelial cell
1
1
medulloblastoma cell line
2
myocyte
1
1
myotube
1
1
neuroepithelial stem cell
2
osteosarcoma
1
1
Adipose SGBS cell line (adipocyte)
1
Barrett's epithelial cell line
1
CD4-positive helper T cell
1
Chondroid Chordoma
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
Uveal Melanoma
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
chondroblastoma
1
chronic lymphocytic leukemia
1
colon carcinoma
1
colonic adenoma cell
1
colorectal cancer
1
colorectal carcinoma
1
dermis microvascular lymphatic vessel endothelial cell
1
ecto neural progenitor cell
1
embryonic fibroblast
1
endometrioid carcinoma
1
endothelial cell
1
ependymoma
1
excitatory neuron
1
fibroblast-like synoviocyte
1
hESC cell
1
head and neck squamous cell carcinoma BICR 16
1
head and neck squamous cell carcinoma BICR 6
1
hematopoietic stem cell
1
hepatocellular carcinoma
1
hippocampal neuron
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
lower motor neuron
1
lymphoid progenitor cell
1
melanoma cell line
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
mid-neurogenesis radial glial cells
1
natural killer cell
1
radial glial cell
1
secretory cell
1
skeletal muscle myoblast
1
stem cell
1
white adipose cell
1
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