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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1016
candidate regulatory elements
583
target gene predictions
555
chromatin state
259
accessible chromatin
182
histone modifications
74
binding sites
72
Fine-mapped variants
54
eQTL
43
variant allelic effects
3
pQTL
2
variant to gene
1
caQTL
1
sQTL
Date released
1482
September, 2022
775
February, 2021
110
March, 2020
84
June, 2020
57
August, 2021
56
May, 2021
55
May, 2020
48
January, 2020
32
November, 2022
25
February, 2020
25
February, 2023
23
August, 2017
22
February, 2024
12
November, 2019
9
May, 2019
8
April, 2019
7
October, 2019
4
September, 2023
3
January, 2022
3
September, 2018
2
May, 2022
1
August, 2020
1
August, 2022
Available data
2196
bed bed3+
526
bed bed9
132
bigWig
96
tsv
36
bigBed bed9
1
bam
Organism
2844
Homo sapiens
Biosample type
2458
tissue
2310
cell line
1803
primary cell
387
in vitro differentiated cells
4
stem cell
Organ
310
brain
301
musculature of body
288
kidney
229
limb
226
intestine
195
heart
179
lung
130
large intestine
120
connective tissue
105
stomach
102
extraembryonic component
91
pancreas
79
small intestine
77
epithelium
76
vasculature
74
blood vessel
74
eye
66
adipose tissue
64
ureter
63
embryo
60
adrenal gland
59
placenta
57
liver
48
thymus
36
artery
35
gonad
34
spinal cord
32
spleen
30
esophagus
29
skin of body
22
nerve
19
ovary
18
bone element
18
skeleton
18
thyroid gland
17
lymphoid tissue
16
testis
13
prostate gland
11
breast
10
uterus
9
mouth
9
tongue
9
urinary bladder
8
penis
8
vagina
5
mammary gland
4
nose
3
bodily fluid
2
blood
2
lymphatic vessel
1
pituitary gland
Project
2840
AMP
5
ITG
Genome assembly (visualization)
2845
hg19
799
GRCh38
3
hg18
BIOSAMPLE
TYPE
2845 results
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Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
histone modifications
binding sites
Fine-mapped variants
eQTL
variant allelic effects
pQTL
variant to gene
caQTL
sQTL
tissue
heart
37
20
21
5
1
1
2
stomach
40
21
19
3
1
kidney
29
14
16
10
2
1
1
1
brain
29
16
18
2
3
1
1
muscle of arm
33
16
16
1
1
lung
33
17
16
small intestine
29
17
15
1
adrenal gland
28
17
14
1
placenta
26
15
14
1
2
1
muscle of leg
27
14
15
2
large intestine
27
14
13
1
1
muscle of back
28
13
13
left lung
26
13
13
thymus
20
14
11
1
1
1
liver
13
10
9
4
2
1
5
1
right lung
22
11
11
1
right kidney
20
10
10
1
renal cortex interstitium
20
9
9
1
1
renal pelvis
19
9
9
2
1
retina
6
3
3
23
1
1
1
left kidney
18
9
9
heart left ventricle
11
7
8
3
1
2
spleen
15
8
6
2
1
spinal cord
14
8
7
1
adipose tissue
7
8
6
2
1
3
1
islet of Langerhans
1
3
6
1
2
9
1
1
sigmoid colon
10
7
5
1
body of pancreas
8
5
4
3
1
1
tibial nerve
6
3
4
3
3
1
2
pancreas
5
5
3
5
1
1
1
pigmented layer of retina
20
psoas muscle
7
8
4
1
caudate nucleus
5
3
4
2
1
3
1
ovary
8
6
4
1
coronary artery
3
3
3
3
3
1
2
gastrocnemius medialis
8
5
4
1
heart right ventricle
6
5
5
1
1
thyroid gland
8
5
4
1
transverse colon
8
5
4
1
muscle of trunk
8
5
4
tibial artery
3
2
3
3
3
1
2
chorionic villus
8
4
4
right atrium auricular region
3
2
2
3
3
1
2
testis
7
3
3
1
1
1
upper lobe of left lung
7
3
3
1
1
1
ascending aorta
4
2
3
1
3
1
1
endocrine pancreas
7
4
4
layer of hippocampus
6
3
4
1
1
omental fat pad
5
2
2
2
3
1
skeletal muscle tissue
6
3
3
1
2
substantia nigra
5
2
3
1
3
1
Peyer's patch
7
3
3
1
cerebellum
3
2
2
1
1
3
1
frontal cortex
2
2
2
2
3
1
1
prostate gland
4
2
2
1
2
2
subcutaneous adipose tissue
2
1
2
3
4
1
temporal lobe
5
2
5
1
aorta
4
4
4
left renal pelvis
6
2
2
1
1
right renal pelvis
6
2
2
1
1
Ammon's horn
2
2
1
2
3
1
breast epithelium
5
3
2
1
esophagus squamous epithelium
6
2
2
1
left cardiac atrium
2
1
6
1
1
left renal cortex interstitium
6
2
2
1
putamen
2
1
1
2
1
3
1
thoracic aorta
4
2
3
1
1
trophoblast
4
3
2
1
1
angular gyrus
4
2
4
chorion membrane
3
3
3
1
colonic mucosa
4
2
3
1
esophagus muscularis mucosa
5
2
2
1
lower leg skin
6
2
2
right renal cortex interstitium
5
2
2
1
cingulate gyrus
4
2
3
duodenal mucosa
4
2
3
esophagus
4
3
2
eye
4
2
2
1
mucosa of rectum
4
2
3
parathyroid adenoma
5
2
2
stomach smooth muscle
4
2
3
tongue
4
2
2
1
limb
3
2
2
1
muscle layer of colon
4
2
2
muscle layer of duodenum
4
2
2
right lobe of liver
2
1
1
3
1
urinary bladder
3
2
2
1
vagina
4
2
2
gastroesophageal sphincter
5
1
1
globus pallidus
2
1
1
2
1
midbrain
1
1
1
2
1
1
occipital lobe
1
1
1
2
1
1
right cardiac atrium
2
2
3
uterus
3
2
1
1
Brodmann (1909) area 46
2
2
2
subcutaneous abdominal adipose tissue
5
1
superior temporal gyrus
1
1
1
2
1
umbilical cord
2
1
1
1
1
amygdala
1
3
1
cartilage tissue
1
2
2
cerebellar cortex
2
1
1
1
cerebellum (Hemisphere)
3
1
1
germinal matrix
2
1
2
hypothalamus
1
3
1
medulla oblongata
1
1
1
2
middle frontal gyrus
2
1
1
1
nucleus accumbens
1
3
1
pons
1
1
1
2
C1 segment of cervical spinal cord
3
1
amnion
2
1
1
anterior cingulate cortex
3
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
1
embryonic facial prominence
1
1
1
1
femur
2
1
1
gastrocnemius medialis(Muscle - Skeletal)
3
1
inferior parietal cortex
1
1
1
1
left ventricle myocardium
3
1
mucosa of stomach
2
1
1
rectum smooth muscle tissue
1
1
2
arm bone
1
1
1
cortex of kidney
1
1
1
germinal center
1
1
1
leg bone
1
1
1
prefrontal cortex
1
1
1
skin of body
1
1
1
suprapubic skin
3
hindlimb muscle
1
1
muscle of leg
2
blood
2
breast carcinoma
1
1
chorion
2
endometrium cancer
1
1
first pancreatic bud
1
1
forelimb muscle
1
1
kidney epithelium
1
1
mammary gland
1
1
middle frontal area 46
2
pancreatic ductal cell
2
pancreatic stellate cell
2
placental basal plate
2
respiratory system smooth muscle
1
1
skin of forearm
1
1
skin of prepuce of penis
1
1
tissue
2
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Schwann cell
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder (urinary bladder)
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebrospinal fluid
1
circle of Willis
1
claustrum of brain
1
colon
1
corneal epithelium
1
crypt of Lieberkuhn
1
dentate nucleus
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dorsolateral prefrontal cortex
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
fallopian tube
1
fetal heart
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
mid-frontal lobe
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary gland
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
right arm bone
1
septal nuclear complex
1
skeletal muscle
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
synovial joint
1
temporal pole
1
thalamic complex
1
tissue-resident macrophage
1
type B pancreatic cell
1
white adipose tissue
1
white matter
1
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
10
10
1
1
1
neural progenitor cell
5
5
4
10
14
adipocyte
4
6
6
4
1
1
embryonic stem cell
1
5
5
1
1
mesenchymal stem cell
3
3
2
1
1
1
T-cell acute lymphoblastic leukemia
5
3
endodermal cell
4
2
2
mesendoderm
2
2
1
1
1
1
neuroblastoma cell line
6
2
neuronal stem cell
2
1
1
2
2
cardiac muscle cell
4
1
1
1
mesodermal cell
4
1
1
1
bipolar neuron
2
2
1
1
dendritic cell
6
muscle cell
2
2
2
retinal pigment epithelial cell
6
SGBS preadipocytes
5
chondrocyte
5
neural cell
3
1
1
trophoblast cell
2
2
1
B cell
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
2
cardiomyocytes (cardiac muscle cell)
3
1
colon adenocarcinoma
2
2
ectodermal cell
2
1
1
hepatocyte
2
1
1
islet precursor cell
2
1
1
neuron
2
1
1
olfactory neurosphere cell line
1
1
1
1
rhabdomyosarcoma cell
4
smooth muscle cell
2
1
1
cardiac mesoderm primordium
1
1
1
esophageal adenocarcinoma
2
1
foreskin keratinocyte
1
1
1
foreskin melanocyte
1
1
1
iPS DF 4.7 Cell Line
1
1
1
mammary gland epithelial cell
1
1
1
pancreatic ductal adenocarcinoma
3
BICR 31
1
1
CD4-positive helper T cell
1
1
CD8-Positive T-Lymphocytes
1
1
EAhy 926 cell
1
1
T-lymphoma cell line
1
1
Th1 cell
1
1
adipose-derived stem cell
1
1
atypical teratoid rhabdoid tumor
1
1
cardiac myoblast
2
cardiac precursors (cardiac muscle cell)
1
1
cardiovascular progenitor cell
2
chronic myelomonocytic leukemia
1
1
colorectal adenocarcinoma
1
1
dermis microvascular lymphatic vessel endothelial cell
1
1
diffuse intrinsic pontine glioma
1
1
diffuse large B-cell lymphoma
1
1
endometrial stromal cell
1
1
endometrial stromal tumor
1
1
endometriosis
2
epidermal stem cell
1
1
erythroid progenitor cell
1
1
fibroblast
1
1
lymphocyte of B lineage (iPSC)
2
medulloblastoma cell line
2
myotube
1
1
natural killer cell
1
1
neuroepithelial stem cell
2
osteosarcoma
1
1
Adipose SGBS cell line (adipocyte)
1
Barrett's epithelial cell line
1
CD8-positive, alpha-beta T cell
1
Chondroid Chordoma
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
T cell
1
Uveal Melanoma
1
cardiac precursors
1
chondroblastoma
1
chronic lymphocytic leukemia
1
colon carcinoma
1
colonic adenoma cell
1
colorectal cancer
1
colorectal carcinoma
1
ecto neural progenitor cell
1
embryonic fibroblast
1
endometrioid carcinoma
1
ependymoma
1
erythroid cell
1
excitatory neuron
1
fibroblast-like synoviocyte
1
hESC cell
1
head and neck squamous cell carcinoma BICR 16
1
head and neck squamous cell carcinoma BICR 6
1
hematopoietic stem cell
1
hepatocellular carcinoma
1
hippocampal neuron
1
lower motor neuron
1
lymphoid progenitor cell
1
melanoma cell line
1
mid-neurogenesis radial glial cells
1
myocyte
1
radial glial cell
1
renal cell carcinoma
1
secretory cell
1
skeletal muscle myoblast
1
skin fibroblast
1
white adipose cell
1
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