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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
937
candidate regulatory elements
518
target gene predictions
197
accessible chromatin
115
eQTL
110
gene expression
89
histone modifications
74
Fine-mapped variants
48
variant allelic effects
36
binding sites
24
chromatin state
5
differential activity
4
variant to gene
3
pQTL
2
caQTL
2
sQTL
1
other
Date released
918
September, 2022
641
February, 2021
104
March, 2020
63
June, 2020
58
January, 2020
57
May, 2020
56
January, 2022
48
February, 2020
46
August, 2021
31
May, 2021
28
March, 2024
26
February, 2023
26
February, 2024
18
August, 2017
17
November, 2022
9
November, 2019
6
March, 2023
3
September, 2018
2
January, 2018
2
May, 2022
2
October, 2019
1
April, 2019
1
August, 2020
1
August, 2022
Available data
1850
bed bed3+
bed bed9
212
tsv
120
bigWig
31
bigBed bed9
bam
Organism
2163
Homo sapiens
Biosample type
2302
primary cell
2173
cell line
2165
tissue
430
in vitro differentiated cells
4
stem cell
Organ
298
brain
241
musculature of body
240
kidney
187
limb
181
intestine
171
heart
138
lung
105
large intestine
104
pancreas
87
connective tissue
85
stomach
76
adipose tissue
75
extraembryonic component
68
blood vessel
68
vasculature
65
eye
61
small intestine
57
epithelium
51
ureter
49
liver
48
adrenal gland
46
placenta
37
thymus
36
artery
32
gonad
29
esophagus
29
spinal cord
28
embryo
28
spleen
22
skin of body
21
nerve
19
bone element
17
ovary
16
thyroid gland
15
skeleton
15
testis
14
lymphoid tissue
13
prostate gland
12
uterus
11
breast
9
mouth
8
tongue
8
urinary bladder
8
vagina
4
bodily fluid
3
blood
3
pituitary gland
2
mammary gland
2
penis
1
vein
Project
2160
AMP
5
ITG
Genome assembly (visualization)
1971
hg19
248
GRCh38
3
hg18
files.file_type!
bam
bed bed9
BIOSAMPLE
TYPE
2165 results
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Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
eQTL
gene expression
histone modifications
Fine-mapped variants
variant allelic effects
binding sites
chromatin state
differential activity
variant to gene
pQTL
caQTL
sQTL
other
tissue
heart
37
20
5
3
1
2
1
stomach
40
21
3
1
1
1
kidney
29
14
10
1
7
2
1
1
brain
29
16
2
2
1
3
1
1
lung
33
17
1
1
muscle of arm
33
16
1
1
adrenal gland
28
17
1
1
1
small intestine
29
17
1
1
placenta
26
15
1
1
2
1
islet of Langerhans
1
6
13
11
1
2
1
2
3
2
2
large intestine
27
14
1
1
muscle of leg
27
14
2
liver
13
10
4
7
1
2
1
1
1
1
muscle of back
28
13
left lung
26
13
retina
6
3
23
1
1
1
1
1
thymus
20
14
1
1
1
right lung
22
11
1
right kidney
20
10
1
1
renal cortex interstitium
20
9
1
1
renal pelvis
19
9
2
1
spleen
15
8
2
1
1
1
left kidney
18
9
adipose tissue
7
8
2
4
3
1
1
heart left ventricle
11
7
3
1
1
1
2
spinal cord
14
8
1
1
subcutaneous adipose tissue
2
2
6
5
3
1
1
1
tibial nerve
6
3
3
2
2
3
2
body of pancreas
8
5
1
2
3
1
pancreas
5
5
5
1
1
1
1
1
pigmented layer of retina
20
caudate nucleus
5
3
2
2
1
1
3
1
1
coronary artery
3
3
3
2
1
3
2
1
sigmoid colon
10
7
1
ovary
8
6
1
1
1
right atrium auricular region
3
2
3
2
2
3
2
omental fat pad
5
2
2
2
2
3
psoas muscle
7
8
1
substantia nigra
5
2
3
1
1
3
1
tibial artery
3
2
3
2
1
3
2
testis
7
3
1
1
1
1
1
thyroid gland
8
5
1
1
transverse colon
8
5
1
1
cerebellum
3
2
1
2
2
1
3
frontal cortex
2
2
2
2
2
3
1
gastrocnemius medialis
8
5
1
heart right ventricle
6
5
1
1
1
putamen
2
1
2
3
1
1
3
1
ascending aorta
4
2
1
1
1
3
1
layer of hippocampus
6
3
1
1
1
1
muscle of trunk
8
5
skeletal muscle tissue
6
3
2
1
1
upper lobe of left lung
7
3
1
1
1
chorionic villus
8
4
prostate gland
4
2
1
1
2
2
Ammon's horn
2
2
2
1
1
3
Peyer's patch
7
3
1
endocrine pancreas
7
4
left cardiac atrium
2
1
1
1
1
5
left renal cortex interstitium
6
2
1
1
left renal pelvis
6
2
1
1
right renal pelvis
6
2
1
1
temporal lobe
5
2
1
1
1
aorta
4
4
1
breast epithelium
5
3
1
esophagus muscularis mucosa
5
2
1
1
esophagus squamous epithelium
6
2
1
right renal cortex interstitium
5
2
1
1
trophoblast
4
3
1
1
colonic mucosa
4
2
1
1
esophagus
4
3
1
lower leg skin
6
2
right lobe of liver
2
1
1
1
3
thoracic aorta
4
2
1
1
uterus
3
2
1
1
1
vagina
4
2
1
1
amygdala
2
1
1
3
chorion membrane
3
3
1
cingulate gyrus
4
2
1
duodenal mucosa
4
2
1
eye
4
2
1
globus pallidus
2
1
2
1
1
hypothalamus
2
1
1
3
midbrain
1
1
2
1
1
1
mucosa of rectum
4
2
1
nucleus accumbens
2
1
1
3
occipital lobe
1
1
2
1
1
1
parathyroid adenoma
5
2
stomach smooth muscle
4
2
1
tongue
4
2
1
angular gyrus
4
2
anterior cingulate cortex
2
1
3
cerebellum (Hemisphere)
1
1
3
1
gastroesophageal sphincter
5
1
limb
3
2
1
muscle layer of colon
4
2
muscle layer of duodenum
4
2
subcutaneous abdominal adipose tissue
5
1
superior temporal gyrus
1
1
2
1
1
urinary bladder
3
2
1
C1 segment of cervical spinal cord
1
1
3
cartilage tissue
2
1
2
gastrocnemius medialis(Muscle - Skeletal)
1
1
3
left ventricle myocardium
1
1
3
medulla oblongata
1
1
2
1
middle frontal gyrus
2
1
1
1
pons
1
1
2
1
right cardiac atrium
2
2
1
skin of body
1
1
3
umbilical cord
2
1
1
1
Brodmann (1909) area 46
2
2
bone tissue
4
cerebellar cortex
2
1
1
cortex of kidney
1
1
1
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
3
visceral abdominal adipose tissue
1
2
1
amnion
2
1
dorsolateral prefrontal cortex
1
1
1
embryonic facial prominence
1
1
1
femur
2
1
germinal matrix
2
1
inferior parietal cortex
1
1
1
mucosa of stomach
2
1
prefrontal cortex
1
1
1
rectum smooth muscle tissue
1
1
1
suprapubic skin
3
hindlimb muscle
1
1
muscle of leg
2
arm bone
1
1
blood
2
breast carcinoma
1
1
chorion
2
endometrium cancer
1
1
fallopian tube
1
1
first pancreatic bud
1
1
forelimb muscle
1
1
germinal center
1
1
kidney epithelium
1
1
leg bone
1
1
mammary gland
1
1
middle frontal area 46
2
minor salivary gland
1
1
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
1
1
placental basal plate
2
respiratory system smooth muscle
1
1
skeletal muscle
1
1
skin of forearm
1
1
skin of prepuce of penis
1
1
tissue
2
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
fetal heart
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
mitral valve
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
parietal lobe
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
prostate
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulmonary valve
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
right arm bone
1
septal nuclear complex
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
synovial joint
1
temporal pole
1
thalamic complex
1
thyroid
1
tissue-resident macrophage
1
tricuspid valve
1
type B pancreatic cell
1
white adipose tissue
1
white matter
1
whole blood
1
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