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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
678
chromatin state
588
gene expression
157
differential activity
149
eQTL
74
Fine-mapped variants
16
variant allelic effects
4
sQTL
3
accessible chromatin
2
hQTL
2
variant to gene
1
meQTL
1
other
1
pQTL
Date released
619
September, 2022
281
September, 2023
153
February, 2021
91
January, 2022
79
May, 2021
78
March, 2020
64
February, 2020
61
March, 2023
60
August, 2021
54
February, 2024
29
March, 2024
27
May, 2022
23
January, 2020
20
May, 2020
9
August, 2018
9
May, 2019
7
April, 2019
5
October, 2019
2
January, 2018
1
August, 2017
1
July, 2020
1
June, 2020
1
November, 2019
1
November, 2020
Available data
bed bed3+
801
tsv
650
bed bed9
530
bigWig
108
txt
35
bigBed bed9
27
bed bed9+
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
1674
Homo sapiens
Biosample type
874
primary cell
802
tissue
227
cell line
123
in vitro differentiated cells
Organ
381
epithelium
333
kidney
145
brain
119
connective tissue
102
vasculature
101
pancreas
91
musculature of body
80
blood vessel
80
heart
68
limb
57
intestine
49
lung
48
liver
40
adipose tissue
33
large intestine
32
extraembryonic component
28
artery
26
stomach
25
skin of body
20
small intestine
16
adrenal gland
16
placenta
14
spinal cord
13
ureter
12
esophagus
12
gonad
11
embryo
11
nerve
11
thymus
10
eye
9
bone element
8
spleen
7
lymphatic vessel
7
mammary gland
6
ovary
6
penis
6
prostate gland
6
testis
6
thyroid gland
6
vein
5
lymphoid tissue
5
mouth
4
breast
4
uterus
4
vagina
3
blood
3
bodily fluid
3
skeleton
3
tongue
3
urinary bladder
2
bone marrow
2
bronchus
2
pituitary gland
1
pericardium
Project
1391
AMP
281
KPMP
4
ITG
Genome assembly (visualization)
847
GRCh38
823
hg19
3
hg18
files.file_type!
bed bed3+
BIOSAMPLE
TYPE
1676 results
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Clear Filters
chromatin state
gene expression
differential activity
eQTL
Fine-mapped variants
variant allelic effects
sQTL
accessible chromatin
hQTL
variant to gene
meQTL
other
pQTL
primary cell
monocyte
15
4
1
1
epithelial cell of proximal tubule
1
16
glomerular endothelial cell
1
14
1
hepatocyte
1
13
common myeloid progenitor, CD34-positive
13
regulatory T cell
3
7
2
T-helper 1 cell
3
7
1
T-helper 17 cell
3
7
1
B cell
8
2
CD4-positive, alpha-beta memory T cell
9
endothelial cell
9
macrophage
2
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
3
3
1
kidney loop of Henle thin ascending limb epithelial cell
7
mature neutrophil
7
pancreatic acinar cell
3
3
1
pancreatic ductal cell
3
3
1
T cell
4
2
glomerular visceral epithelial cell
1
5
kidney interstitial cell
6
mononuclear cell
6
natural killer cell
3
2
1
neutrophil
2
2
1
1
pancreatic alpha cell
3
3
pancreatic beta cell
3
3
pancreatic delta cell
3
3
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
alternatively activated macrophage
4
1
endothelial cell of umbilical vein
4
1
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
1
1
pancreatic stellate cell
2
3
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
1
3
endothelial cell of hepatic sinusoid
4
foreskin keratinocyte
4
gamma-delta T cell
4
inflammatory macrophage
3
1
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
3
1
nephron progenitor
4
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic endothelial cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
skeletal muscle myoblast
2
1
1
skeletal muscle satellite cell
2
2
trophoblast cell
4
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
T follicular helper cell
2
1
adult endothelial progenitor cell
3
blood cell
3
central memory CD8-positive, alpha-beta T cell
3
effector memory CD8-positive, alpha-beta T cell
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
1
1
1
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
1
1
1
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
2
1
mammary gland epithelial cell
3
memory B cell
3
naive B cel
2
1
naive T cell
3
neurosphere
3
osteoblast
1
2
pancreatic quiescent stellate cell
3
Kupffer cell
2
astrocyte
1
1
bronchial epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
epithelial cell of prostate
2
erythroblast
2
fibroblast
2
fibroblast of breast
2
keratinocyte
2
kidney capillary endothelial cell
1
1
kidney epithelial cell
1
1
kidney inner medulla collecting duct intercalated cell
2
leukocyte
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell
1
1
myoepithelial cell of mammary gland
2
pancreatic polypeptide-secreting cell
2
renal cortical epithelial cell
1
1
renal vesicle
2
skeletal muscle fiber
2
skin fibroblast
2
vascular associated smooth muscle cell
2
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
CD1c-positive myeloid dendritic cell
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Leydig cell
1
Schwann cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
activated pancreatic stellate cell
1
adipocyte
1
alpha-beta T cell
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
brain microvascular endothelial cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cholangiocyte
1
choroid plexus epithelial cell
1
cytotoxic T cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
effector memory CD4-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of coronary artery
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of distal tubule
1
epithelial cell of esophagus
1
erythroid lineage cell
1
fat cell
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
foreskin melanocyte
1
glial cell
1
helper T cell
1
iris pigment epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
luminal epithelial cell of mammary gland
1
lung microvascular endothelial cell
1
mammary stem cell
1
mast cell
1
mature B cell
1
mature eosinophil
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
meso-epithelial cell
1
microglial cell
1
myeloid dendritic cell
1
naive B cell
1
naive regulatory T cell
1
neural cell
1
non-pigmented ciliary epithelial cell
1
pancreatic cell
1
pancreatic epsilon cell
1
pericardium fibroblast
1
pericyte cell
1
plasma cell
1
progenitor cell
1
proximal tubule
1
pulmonary artery endothelial cell
1
quiescent pancreatic stellate cell
1
regular cardiac myocyte
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal principal cell
1
retinal pigment epithelial cell
1
sensory neuron
1
skeletal muscle cell
1
smooth muscle cell
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
stromal cell of bone marrow
1
type I muscle cell
1
type II muscle cell
1
ureteric bud
1
tissue
islet of Langerhans
11
12
2
1
2
heart
21
3
kidney
16
7
brain
18
1
2
stomach
19
1
1
lung
16
1
1
liver
8
1
1
7
adrenal gland
14
1
1
muscle of arm
16
small intestine
15
1
muscle of leg
15
placenta
14
1
subcutaneous adipose tissue
5
1
5
3
large intestine
13
left lung
13
muscle of back
13
adipose tissue
6
3
3
right kidney
10
1
right lung
11
thymus
11
tibial nerve
4
2
2
3
body of pancreas
4
2
1
3
caudate nucleus
3
1
2
3
1
heart left ventricle
8
1
1
cerebellum
2
2
2
3
coronary artery
3
1
2
3
frontal cortex
2
2
2
3
left kidney
9
omental fat pad
2
2
2
3
putamen
1
1
3
3
1
renal cortex interstitium
9
renal pelvis
9
right atrium auricular region
2
2
2
3
substantia nigra
2
1
3
3
tibial artery
3
1
2
3
ascending aorta
3
1
1
3
spinal cord
7
1
spleen
6
1
1
Ammon's horn
1
1
1
3
amygdala
1
2
3
anterior cingulate cortex
1
2
3
heart right ventricle
5
1
hypothalamus
1
2
3
nucleus accumbens
1
2
3
ovary
4
1
1
right lobe of liver
1
1
1
3
skeletal muscle tissue
3
1
2
C1 segment of cervical spinal cord
1
1
3
aorta
4
1
cerebellum (Hemisphere)
1
1
3
gastrocnemius medialis(Muscle - Skeletal)
1
1
3
left ventricle myocardium
1
1
3
retina
3
1
1
sigmoid colon
5
temporal lobe
4
1
testis
3
1
1
thyroid gland
4
1
transverse colon
4
1
angular gyrus
4
bone tissue
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
3
endocrine pancreas
4
gastrocnemius medialis
4
layer of hippocampus
3
1
muscle of trunk
4
psoas muscle
4
right cardiac atrium
3
1
skin of body
1
3
vagina
2
1
1
visceral abdominal adipose tissue
2
1
1
Peyer's patch
3
cartilage tissue
2
1
chorion membrane
3
esophagus
2
1
esophagus muscularis mucosa
2
1
left renal cortex interstitium
2
1
pancreas
2
1
prostate gland
2
1
right renal cortex interstitium
2
1
thoracic aorta
3
upper lobe of left lung
3
uterus
1
1
1
Brodmann (1909) area 46
2
blood
2
breast epithelium
2
cingulate gyrus
2
colonic mucosa
2
dorsolateral prefrontal cortex
1
1
duodenal mucosa
2
esophagus squamous epithelium
2
eye
2
germinal matrix
2
globus pallidus
1
1
left cardiac atrium
1
1
left renal pelvis
2
limb
2
lower leg skin
2
medulla oblongata
1
1
midbrain
1
1
middle frontal gyrus
1
1
minor salivary gland
1
1
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
occipital lobe
1
1
parathyroid adenoma
2
pons
1
1
right renal pelvis
2
stomach smooth muscle
2
superior temporal gyrus
1
1
tongue
2
trophoblast
2
urinary bladder
2
Pancreatic islets
1
abdominal aorta artery
1
amnion
1
aorta wall
1
aortic valve
1
arm bone
1
bladder
1
breast
1
breast - mammary tissue
1
cerebellar cortex
1
cerebellar hemisphere
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
cortex
1
cortex of kidney
1
diencephalon
1
embryonic facial prominence
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
fallopian tube
1
femur
1
gastroesophageal sphincter
1
germinal center
1
inferior parietal cortex
1
kidney - cortex
1
kidney - medulla
1
leg bone
1
metanephros
1
mitral valve
1
mucosa of stomach
1
parietal lobe
1
pituitary
1
pituitary gland
1
prostate
1
pulmonary valve
1
rectum smooth muscle tissue
1
renal glomerulus
1
skeletal muscle
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
synovial joint
1
thyroid
1
tricuspid valve
1
umbilical cord
1
whole blood
1
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