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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1669
candidate regulatory elements
1183
target gene predictions
977
histone modifications
861
accessible chromatin
811
binding sites
609
gene expression
162
differential activity
162
eQTL
84
variant allelic effects
74
Fine-mapped variants
69
chromatin state
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2590
February, 2021
1675
September, 2022
384
May, 2021
February, 2024
333
November, 2021
289
June, 2020
286
September, 2023
152
May, 2020
128
August, 2021
128
March, 2020
106
January, 2022
101
October, 2022
83
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
34
August, 2017
32
February, 2023
30
March, 2024
19
April, 2020
13
November, 2019
9
August, 2018
9
October, 2019
3
November, 2020
3
September, 2018
2
January, 2018
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
5630
bed bed3+
bed bed9
831
tsv
508
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
5
bigBed narrowPeak
bam
3
bed gappedPeak
3
xls
Organism
6650
Homo sapiens
Biosample type
2150
primary cell
2139
tissue
2005
cell line
398
in vitro differentiated cells
4
stem cell
Organ
820
epithelium
574
kidney
399
brain
399
connective tissue
289
musculature of body
240
lung
236
pancreas
228
intestine
217
vasculature
204
heart
194
limb
169
skin of body
165
bodily fluid
162
blood vessel
156
blood
138
large intestine
137
embryo
113
extraembryonic component
112
liver
99
eye
94
stomach
79
adipose tissue
75
bone element
72
mammary gland
67
artery
65
small intestine
64
prostate gland
58
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
thymus
36
esophagus
35
spinal cord
28
spleen
28
uterus
22
testis
21
nerve
19
lymphatic vessel
19
ovary
19
vein
18
lymphoid tissue
18
thyroid gland
15
mouth
15
skeleton
13
bronchus
13
pituitary gland
12
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
5992
AMP
333
ENCODE
281
KPMP
59
T1D
19
LungMap
9
community
5
ITG
Genome assembly (visualization)
5784
hg19
791
GRCh38
4
hg18
files.file_type!
bam
bed bed9
month_released!
February, 2024
BIOSAMPLE
TYPE
6698 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
gene expression
differential activity
eQTL
variant allelic effects
Fine-mapped variants
chromatin state
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
primary cell
monocyte
2
86
18
1
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
3
1
common myeloid progenitor, CD34-positive
27
14
endothelial cell
7
1
14
2
8
2
B cell
13
10
6
2
+ See 438 more…
tissue
heart
37
20
1
5
1
3
2
stomach
40
21
1
3
1
1
kidney
29
14
2
10
1
7
1
1
brain
29
16
3
2
1
1
2
1
lung
33
17
1
1
+ See 249 more…
cell line
A549
21
19
1
1
2
EndoC_BH1
1
1
8
1
8
3
1
MCF-7
9
6
2
1
3
breast cancer cell
11
9
K562
7
7
1
1
2
1
+ See 758 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
3
1
1
4
cardiomyocytes
11
embryonic stem cell
1
1
6
1
+ See 116 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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