Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
273
gene expression
232
accessible chromatin
170
candidate regulatory elements
169
target gene predictions
104
chromatin state
92
differential activity
51
variant allelic effects
47
binding sites
34
histone modifications
9
Fine-mapped variants
9
eQTL
4
caQTL
Date released
256
September, 2022
243
February, 2021
155
September, 2023
132
November, 2021
81
February, 2024
38
March, 2023
38
May, 2021
31
August, 2021
30
June, 2020
26
January, 2020
26
May, 2020
21
March, 2020
20
January, 2021
19
February, 2020
15
February, 2023
15
November, 2022
7
April, 2020
7
October, 2019
6
April, 2019
6
August, 2018
6
October, 2022
4
November, 2019
3
August, 2017
3
January, 2022
2
March, 2024
2
May, 2022
1
July, 2020
1
May, 2019
Available data
714
bed bed3+
353
tsv
195
bigWig
96
bed bed9
78
txt
14
bigBed narrowPeak
12
bigBed bed9
6
csv
bam
3
bed gappedPeak
3
xls
Organism
1194
Homo sapiens
Biosample type
840
primary cell
275
tissue
52
cell line
27
in vitro differentiated cells
Organ
946
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
274
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
155
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
878
AMP
155
KPMP
132
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
820
hg19
322
GRCh38
files.file_type!
bam
BIOSAMPLE
TYPE
1194 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
candidate regulatory elements
target gene predictions
chromatin state
differential activity
variant allelic effects
binding sites
histone modifications
Fine-mapped variants
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
hepatocyte
13
8
1
3
1
2
1
4
epithelial cell of proximal tubule
16
1
2
1
1
1
1
glomerular endothelial cell
14
2
2
1
1
1
endothelial cell of umbilical vein
2
6
4
5
1
2
+ See 153 more…
tissue
heart
3
5
37
20
21
2
1
1
heart left ventricle
1
3
11
7
8
2
1
1
coronary artery
1
3
3
3
3
2
3
2
1
pigmented layer of retina
20
heart right ventricle
1
1
6
5
5
1
+ See 29 more…
cell line
EndoC_BH1
8
8
1
3
1
fibroblast of cardiac tissue
2
1
2
keratinocyte
3
1
smooth muscle cell of the coronary artery
1
1
1
1
choroid plexus epithelial cell
1
1
1
+ See 8 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
2
1
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 5 more…
See all biosamples
Download