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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1602
candidate regulatory elements
1313
target gene predictions
972
histone modifications
858
accessible chromatin
811
binding sites
681
gene expression
168
eQTL
167
differential activity
139
variant allelic effects
74
Fine-mapped variants
38
chromatin state
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
pQTL
2
other
1
representative DNase hypersensitivity sites
Date released
2544
February, 2021
1613
September, 2022
379
May, 2021
375
February, 2024
327
November, 2021
286
September, 2023
282
June, 2020
128
August, 2021
127
March, 2020
106
May, 2020
104
January, 2022
100
October, 2022
83
January, 2020
70
March, 2023
63
February, 2020
56
January, 2021
44
November, 2022
32
August, 2017
31
February, 2023
28
March, 2024
19
April, 2020
15
May, 2022
13
November, 2019
9
August, 2018
9
October, 2019
3
November, 2020
3
September, 2018
2
January, 2018
2
May, 2024
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
5740
bed bed3+
897
tsv
bed bed9
499
bigWig
108
txt
40
bigBed bed9
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6859
Homo sapiens
Biosample type
2229
primary cell
2136
cell line
2059
tissue
430
in vitro differentiated cells
4
stem cell
Organ
899
epithelium
575
kidney
419
connective tissue
399
brain
304
musculature of body
264
pancreas
241
lung
234
intestine
234
vasculature
209
heart
194
limb
193
bodily fluid
188
embryo
184
blood
177
blood vessel
170
skin of body
142
liver
large intestine
113
extraembryonic component
100
eye
96
stomach
81
adipose tissue
79
uterus
74
bone element
73
mammary gland
67
artery
65
prostate gland
65
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
testis
21
nerve
19
lymphatic vessel
19
lymphoid tissue
19
ovary
19
thyroid gland
19
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
11
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
6157
AMP
327
ENCODE
281
KPMP
59
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
5877
hg19
996
GRCh38
4
hg18
files.file_type!
bed bed9+
bed bed9
organ_slims!
large intestine
BIOSAMPLE
TYPE
6859 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
gene expression
eQTL
differential activity
variant allelic effects
Fine-mapped variants
chromatin state
caQTL
hQTL
sQTL
variant to gene
meQTL
pQTL
other
representative DNase hypersensitivity sites
primary cell
monocyte
2
86
16
1
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
2
3
common myeloid progenitor, CD34-positive
27
14
endothelial cell
7
1
15
2
9
1
2
2
hepatocyte
1
3
4
8
1
13
2
+ See 444 more…
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
1
2
8
A549
21
19
1
1
2
K562
7
23
1
1
2
1
EndoC_BH1
1
1
8
1
8
3
1
+ See 758 more…
tissue
heart
37
20
1
5
1
3
2
stomach
40
21
1
3
1
1
kidney
29
14
2
10
1
7
1
1
brain
29
16
3
2
1
1
2
1
lung
33
17
1
1
+ See 248 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
4
1
1
4
cardiomyocytes
11
embryonic stem cell
1
1
6
1
+ See 121 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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