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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1246
target gene predictions
977
histone modifications
817
binding sites
691
accessible chromatin
683
gene expression
171
eQTL
167
differential activity
140
variant allelic effects
74
Fine-mapped variants
41
chromatin state
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2590
February, 2021
1678
September, 2022
384
May, 2021
378
February, 2024
289
June, 2020
286
September, 2023
152
May, 2020
128
August, 2021
128
March, 2020
106
January, 2022
101
October, 2022
83
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
44
November, 2022
35
August, 2017
32
February, 2023
30
March, 2024
19
April, 2020
15
May, 2022
13
November, 2019
9
August, 2018
9
October, 2019
3
November, 2020
3
September, 2018
2
January, 2018
2
May, 2024
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
5590
bed bed3+
900
tsv
bed bed9
324
bigWig
108
txt
40
bigBed bed9
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6667
Homo sapiens
Biosample type
2166
cell line
2166
tissue
1947
primary cell
430
in vitro differentiated cells
4
stem cell
Organ
772
epithelium
572
kidney
400
brain
369
connective tissue
293
musculature of body
246
pancreas
232
lung
228
vasculature
215
intestine
199
heart
194
limb
193
bodily fluid
186
embryo
184
blood
174
blood vessel
160
skin of body
137
liver
135
large intestine
110
extraembryonic component
96
eye
87
stomach
81
adipose tissue
77
uterus
73
bone element
67
artery
67
mammary gland
65
prostate gland
61
small intestine
55
placenta
54
lymph node
54
penis
51
ureter
49
adrenal gland
40
gonad
37
thymus
35
spinal cord
34
esophagus
28
spleen
22
testis
21
nerve
19
lymphoid tissue
19
vein
17
ovary
17
thyroid gland
16
lymphatic vessel
15
mouth
15
skeleton
13
pituitary gland
12
bronchus
11
breast
10
bone marrow
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
6339
AMP
ENCODE
281
KPMP
60
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
5728
hg19
674
GRCh38
4
hg18
files.file_type!
bed bed9
bed bed9+
award.project!
ENCODE
BIOSAMPLE
TYPE
6715 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
accessible chromatin
gene expression
eQTL
differential activity
variant allelic effects
Fine-mapped variants
chromatin state
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
2
1
8
A549
21
19
1
2
1
K562
7
23
1
2
1
1
EndoC_BH1
1
1
1
8
8
3
1
+ See 765 more…
tissue
heart
37
20
1
1
5
3
2
stomach
40
21
1
3
1
1
kidney
29
14
2
1
10
7
1
1
brain
29
16
3
1
2
1
2
1
lung
33
17
1
1
+ See 261 more…
primary cell
monocyte
2
86
1
18
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
4
30
3
3
common myeloid progenitor, CD34-positive
27
14
hepatocyte
1
2
4
1
7
13
2
B cell
14
10
3
2
+ See 390 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
4
1
4
cardiomyocytes
11
embryonic stem cell
1
1
1
6
+ See 121 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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