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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
937
candidate regulatory elements
518
target gene predictions
115
eQTL
110
gene expression
89
histone modifications
79
accessible chromatin
74
Fine-mapped variants
48
variant allelic effects
36
binding sites
25
chromatin state
5
differential activity
4
variant to gene
3
pQTL
2
caQTL
2
sQTL
1
other
Date released
917
September, 2022
633
February, 2021
104
March, 2020
63
June, 2020
56
January, 2022
50
May, 2020
48
February, 2020
39
August, 2021
31
May, 2021
28
March, 2024
19
August, 2017
18
January, 2020
13
February, 2024
8
November, 2022
7
February, 2023
6
March, 2023
2
January, 2018
2
May, 2022
1
April, 2019
1
August, 2020
1
August, 2022
Available data
1850
bed bed3+
bed bed9
212
tsv
bigWig
31
bigBed bed9
1
bam
Organism
2046
Homo sapiens
Biosample type
2169
cell line
2048
tissue
1895
primary cell
418
in vitro differentiated cells
4
stem cell
Organ
286
brain
237
musculature of body
224
kidney
181
intestine
173
limb
157
heart
138
lung
105
large intestine
88
pancreas
85
stomach
80
connective tissue
75
extraembryonic component
71
adipose tissue
61
blood vessel
61
small intestine
61
vasculature
48
adrenal gland
48
liver
48
ureter
46
placenta
37
thymus
36
epithelium
36
eye
32
gonad
31
artery
29
esophagus
29
spinal cord
28
embryo
27
spleen
22
skin of body
19
nerve
17
ovary
16
thyroid gland
15
testis
14
lymphoid tissue
13
prostate gland
12
uterus
11
bone element
11
breast
9
mouth
8
tongue
8
urinary bladder
8
vagina
7
skeleton
4
bodily fluid
3
blood
3
pituitary gland
2
mammary gland
2
penis
1
vein
Project
2043
AMP
5
ITG
Genome assembly (visualization)
1854
hg19
159
GRCh38
3
hg18
files.file_type!
bed bed9
bigWig
BIOSAMPLE
TYPE
2048 results
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Clear Filters
candidate regulatory elements
target gene predictions
eQTL
gene expression
histone modifications
accessible chromatin
Fine-mapped variants
variant allelic effects
binding sites
chromatin state
differential activity
variant to gene
pQTL
caQTL
sQTL
other
tissue
stomach
40
21
1
1
1
3
heart
37
20
3
1
2
2
1
kidney
29
14
1
7
2
1
1
1
brain
29
16
2
1
3
1
1
1
lung
33
17
1
1
muscle of arm
33
16
1
adrenal gland
28
17
1
1
1
small intestine
29
17
1
1
placenta
26
15
1
2
1
1
large intestine
27
14
1
1
muscle of leg
27
14
1
muscle of back
28
13
islet of Langerhans
1
13
11
1
2
2
1
2
3
2
2
liver
13
10
7
1
2
2
1
2
1
1
left lung
26
13
thymus
20
14
1
1
1
right lung
22
11
1
right kidney
20
10
1
renal cortex interstitium
20
9
1
renal pelvis
19
9
1
1
left kidney
18
9
spleen
15
8
1
1
1
1
adipose tissue
7
8
4
3
1
1
1
spinal cord
14
8
1
1
heart left ventricle
11
7
1
1
1
2
retina
6
3
1
1
1
7
1
1
body of pancreas
8
5
1
2
3
1
subcutaneous adipose tissue
2
6
5
3
1
1
1
tibial nerve
6
3
2
2
1
3
2
caudate nucleus
5
3
2
1
1
1
3
1
1
sigmoid colon
10
7
1
ovary
8
6
1
1
1
pancreas
5
5
1
1
2
1
1
1
psoas muscle
7
8
1
substantia nigra
5
2
3
1
1
3
1
coronary artery
3
3
2
1
3
2
1
right atrium auricular region
3
2
2
2
1
3
2
testis
7
3
1
1
1
1
1
thyroid gland
8
5
1
1
transverse colon
8
5
1
1
gastrocnemius medialis
8
5
1
omental fat pad
5
2
2
2
3
tibial artery
3
2
2
1
1
3
2
cerebellum
3
2
2
2
1
3
frontal cortex
2
2
2
2
1
3
1
heart right ventricle
6
5
1
1
layer of hippocampus
6
3
1
1
1
1
muscle of trunk
8
5
putamen
2
1
3
1
1
1
3
1
skeletal muscle tissue
6
3
2
1
1
upper lobe of left lung
7
3
1
1
1
ascending aorta
4
2
1
1
3
1
chorionic villus
8
4
prostate gland
4
2
1
2
1
2
Peyer's patch
7
3
1
endocrine pancreas
7
4
Ammon's horn
2
2
1
1
1
3
left cardiac atrium
2
1
1
1
5
temporal lobe
5
2
1
1
1
aorta
4
4
1
breast epithelium
5
3
1
esophagus muscularis mucosa
5
2
1
1
esophagus squamous epithelium
6
2
1
left renal cortex interstitium
6
2
1
left renal pelvis
6
2
1
right renal pelvis
6
2
1
trophoblast
4
3
1
1
colonic mucosa
4
2
1
1
esophagus
4
3
1
lower leg skin
6
2
right lobe of liver
2
1
1
1
3
right renal cortex interstitium
5
2
1
uterus
3
2
1
1
1
vagina
4
2
1
1
amygdala
2
1
1
3
chorion membrane
3
3
1
cingulate gyrus
4
2
1
duodenal mucosa
4
2
1
eye
4
2
1
hypothalamus
2
1
1
3
mucosa of rectum
4
2
1
nucleus accumbens
2
1
1
3
parathyroid adenoma
5
2
pigmented layer of retina
7
stomach smooth muscle
4
2
1
thoracic aorta
4
2
1
tongue
4
2
1
angular gyrus
4
2
anterior cingulate cortex
2
1
3
cerebellum (Hemisphere)
1
1
3
1
gastroesophageal sphincter
5
1
globus pallidus
2
1
1
1
1
limb
3
2
1
midbrain
1
1
1
1
1
1
muscle layer of colon
4
2
muscle layer of duodenum
4
2
occipital lobe
1
1
1
1
1
1
subcutaneous abdominal adipose tissue
5
1
urinary bladder
3
2
1
C1 segment of cervical spinal cord
1
1
3
cartilage tissue
2
1
2
gastrocnemius medialis(Muscle - Skeletal)
1
1
3
left ventricle myocardium
1
1
3
right cardiac atrium
2
2
1
skin of body
1
1
3
superior temporal gyrus
1
1
1
1
1
umbilical cord
2
1
1
1
Brodmann (1909) area 46
2
2
bone tissue
4
cortex of kidney
1
1
1
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
3
medulla oblongata
1
1
1
1
middle frontal gyrus
2
1
1
pons
1
1
1
1
visceral abdominal adipose tissue
1
2
1
amnion
2
1
cerebellar cortex
2
1
dorsolateral prefrontal cortex
1
1
1
embryonic facial prominence
1
1
1
femur
2
1
germinal matrix
2
1
inferior parietal cortex
1
1
1
mucosa of stomach
2
1
prefrontal cortex
1
1
1
rectum smooth muscle tissue
1
1
1
suprapubic skin
3
muscle of leg
2
arm bone
1
1
blood
2
breast carcinoma
1
1
chorion
2
endometrium cancer
1
1
fallopian tube
1
1
first pancreatic bud
1
1
germinal center
1
1
kidney epithelium
1
1
leg bone
1
1
mammary gland
1
1
middle frontal area 46
2
minor salivary gland
1
1
pituitary gland
1
1
placental basal plate
2
respiratory system smooth muscle
1
1
skeletal muscle
1
1
skin of forearm
1
1
skin of prepuce of penis
1
1
tissue
2
hindlimb muscle
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
forelimb muscle
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
mitral valve
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
parietal lobe
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
prostate
1
pulmonary valve
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
right arm bone
1
septal nuclear complex
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
synovial joint
1
temporal pole
1
thalamic complex
1
thyroid
1
tricuspid valve
1
white adipose tissue
1
white matter
1
whole blood
1
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