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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1339
target gene predictions
977
histone modifications
859
accessible chromatin
817
binding sites
683
gene expression
169
eQTL
167
differential activity
74
Fine-mapped variants
61
variant allelic effects
41
chromatin state
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
pQTL
2
other
1
representative DNase hypersensitivity sites
Date released
2590
February, 2021
1678
September, 2022
384
May, 2021
378
February, 2024
333
November, 2021
289
June, 2020
286
September, 2023
May, 2020
128
August, 2021
128
March, 2020
106
January, 2022
101
October, 2022
83
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
44
November, 2022
35
August, 2017
32
February, 2023
30
March, 2024
19
April, 2020
15
May, 2022
13
November, 2019
9
August, 2018
9
October, 2019
3
November, 2020
3
September, 2018
2
January, 2018
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
5788
bed bed3+
898
tsv
bed bed9
493
bigWig
108
txt
37
bigBed bed9
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6892
Homo sapiens
Biosample type
2192
primary cell
2164
cell line
2109
tissue
423
in vitro differentiated cells
4
stem cell
Organ
884
epithelium
556
kidney
407
connective tissue
381
brain
299
musculature of body
258
pancreas
241
lung
234
intestine
220
vasculature
199
heart
193
bodily fluid
188
embryo
186
limb
184
blood
170
skin of body
167
blood vessel
141
large intestine
139
liver
113
extraembryonic component
98
eye
96
stomach
79
uterus
78
adipose tissue
73
bone element
73
mammary gland
65
prostate gland
65
small intestine
63
artery
59
adrenal gland
57
placenta
54
lymph node
54
penis
48
ureter
42
gonad
38
esophagus
37
thymus
35
spinal cord
28
spleen
22
testis
19
lymphatic vessel
19
lymphoid tissue
19
nerve
19
ovary
19
thyroid gland
17
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
11
breast
10
bone marrow
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
6187
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
9
community
5
ITG
Genome assembly (visualization)
5926
hg19
999
GRCh38
4
hg18
files.file_type!
bed bed9
bed bed9+
month_released!
May, 2020
BIOSAMPLE
TYPE
6894 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
gene expression
eQTL
differential activity
Fine-mapped variants
variant allelic effects
chromatin state
caQTL
hQTL
sQTL
variant to gene
meQTL
pQTL
other
representative DNase hypersensitivity sites
primary cell
monocyte
1
86
16
1
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
4
30
2
3
common myeloid progenitor, CD34-positive
27
14
endothelial cell
7
1
15
2
9
1
2
2
hepatocyte
1
3
4
8
1
13
1
+ See 440 more…
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
1
2
8
A549
21
19
1
1
2
K562
7
23
1
1
2
1
EndoC_BH1
1
1
8
1
8
3
+ See 765 more…
tissue
heart
37
20
1
5
1
3
stomach
40
21
1
3
1
1
kidney
29
14
2
10
1
7
1
brain
29
16
3
2
1
1
2
lung
33
17
1
1
+ See 257 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
4
1
1
4
cardiomyocytes
11
embryonic stem cell
1
1
6
1
+ See 119 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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