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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1652
candidate regulatory elements
1341
target gene predictions
976
histone modifications
815
binding sites
661
gene expression
383
accessible chromatin
165
differential activity
156
eQTL
133
variant allelic effects
73
chromatin state
68
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2553
February, 2021
1658
September, 2022
368
May, 2021
338
February, 2024
288
June, 2020
286
September, 2023
120
March, 2020
111
November, 2021
102
August, 2021
101
October, 2022
99
January, 2022
96
May, 2020
70
March, 2023
59
February, 2020
42
May, 2022
33
August, 2017
32
November, 2022
30
March, 2024
28
January, 2021
17
January, 2020
13
February, 2023
9
August, 2018
1
April, 2019
1
August, 2020
1
August, 2022
1
January, 2018
1
July, 2020
1
November, 2019
1
November, 2020
Available data
5874
bed bed3+
876
tsv
bed bed9
bigWig
108
txt
39
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6456
Homo sapiens
Biosample type
2166
cell line
1977
tissue
1894
primary cell
417
in vitro differentiated cells
4
stem cell
Organ
723
epithelium
540
kidney
379
brain
362
connective tissue
288
musculature of body
232
lung
223
intestine
207
pancreas
204
vasculature
193
bodily fluid
188
heart
186
embryo
184
blood
180
limb
165
skin of body
155
blood vessel
138
large intestine
119
liver
110
extraembryonic component
91
stomach
78
uterus
adipose tissue
70
mammary gland
65
bone element
65
prostate gland
64
eye
63
small intestine
59
artery
55
placenta
54
lymph node
54
penis
53
adrenal gland
48
ureter
41
gonad
37
thymus
36
esophagus
35
spinal cord
27
spleen
22
testis
19
lymphoid tissue
19
nerve
18
ovary
18
thyroid gland
18
vein
16
lymphatic vessel
15
mouth
13
pituitary gland
12
bronchus
11
breast
10
bone marrow
8
tongue
8
urinary bladder
8
vagina
7
skeleton
5
trachea
3
nose
1
pericardium
Project
6022
AMP
281
KPMP
111
ENCODE
32
T1D
9
community
5
ITG
Genome assembly (visualization)
5504
hg19
616
GRCh38
2
hg18
files.file_type!
bed bed9
bigWig
organ_slims!
adipose tissue
BIOSAMPLE
TYPE
6460 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
gene expression
accessible chromatin
differential activity
eQTL
variant allelic effects
chromatin state
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
2
8
1
A549
21
19
1
2
1
K562
7
23
1
2
1
1
EndoC_BH1
1
1
1
8
7
3
1
+ See 763 more…
tissue
stomach
40
21
1
1
3
1
heart
37
20
1
1
3
2
2
kidney
29
14
2
1
7
1
1
1
brain
29
16
3
1
1
1
2
1
lung
33
17
1
1
+ See 234 more…
primary cell
monocyte
2
86
1
15
2
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
3
1
common myeloid progenitor, CD34-positive
27
14
CD14-positive monocyte
8
19
B cell
14
10
2
+ See 410 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
7
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
1
3
4
cardiomyocytes
11
embryonic stem cell
1
1
1
6
+ See 119 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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