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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1354
target gene predictions
977
histone modifications
817
binding sites
385
accessible chromatin
144
eQTL
136
variant allelic effects
75
chromatin state
43
gene expression
13
caQTL
9
differential activity
5
hQTL
5
sQTL
3
meQTL
3
other
3
pQTL
2
Fine-mapped variants
2
variant to gene
Date released
2398
February, 2021
1674
September, 2022
289
June, 2020
283
May, 2021
282
February, 2024
111
November, 2021
102
January, 2022
101
October, 2022
99
May, 2020
59
August, 2021
49
March, 2020
42
May, 2022
35
August, 2017
33
November, 2022
28
January, 2021
17
February, 2020
13
March, 2023
12
February, 2023
9
August, 2018
5
September, 2023
1
April, 2019
1
August, 2020
1
August, 2022
1
January, 2020
1
November, 2019
Available data
5923
bed bed3+
tsv
bed bed9
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
5644
Homo sapiens
Biosample type
2147
cell line
1836
tissue
1315
primary cell
343
in vitro differentiated cells
4
stem cell
Organ
408
epithelium
312
brain
299
connective tissue
289
kidney
274
musculature of body
231
lung
220
intestine
192
bodily fluid
183
blood
176
embryo
163
limb
163
skin of body
159
heart
144
vasculature
136
large intestine
131
pancreas
112
blood vessel
110
extraembryonic component
100
liver
89
stomach
76
uterus
70
mammary gland
64
prostate gland
63
small intestine
62
eye
61
bone element
55
placenta
54
adipose tissue
54
lymph node
54
penis
52
adrenal gland
48
ureter
43
artery
39
gonad
37
thymus
34
esophagus
30
spinal cord
26
spleen
21
testis
18
lymphoid tissue
17
ovary
17
thyroid gland
17
vein
14
mouth
13
nerve
12
bronchus
12
pituitary gland
11
lymphatic vessel
10
bone marrow
10
breast
7
skeleton
7
tongue
7
urinary bladder
7
vagina
5
trachea
3
nose
1
pericardium
Project
5490
AMP
111
ENCODE
32
T1D
9
community
5
ITG
Genome assembly (visualization)
5464
hg19
530
GRCh38
4
hg18
files.file_type!
bed bed9
tsv
bigWig
BIOSAMPLE
TYPE
5647 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
accessible chromatin
eQTL
variant allelic effects
chromatin state
gene expression
caQTL
differential activity
hQTL
sQTL
meQTL
other
pQTL
Fine-mapped variants
variant to gene
cell line
HeLa-S3
5
55
1
A549
21
19
1
2
1
H1-hESC
1
39
1
2
1
K562
7
23
1
2
1
1
MCF-7
9
6
2
3
1
+ See 761 more…
tissue
stomach
40
21
1
3
1
heart
37
20
1
1
2
2
brain
29
16
3
1
1
2
1
lung
33
17
1
muscle of arm
33
16
1
+ See 211 more…
primary cell
monocyte
2
86
1
2
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
1
common myeloid progenitor, CD34-positive
27
14
CD14-positive monocyte
8
19
B cell
14
10
+ See 292 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
1
3
4
embryonic stem cell
1
1
1
6
mesenchymal stem cell
3
3
1
1
1
+ See 102 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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