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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1200
target gene predictions
863
histone modifications
833
accessible chromatin
817
binding sites
593
gene expression
168
eQTL
167
differential activity
75
chromatin state
74
Fine-mapped variants
61
variant allelic effects
13
caQTL
4
variant to gene
3
pQTL
2
sQTL
1
other
1
representative DNase hypersensitivity sites
Date released
2590
February, 2021
1678
September, 2022
May, 2021
378
February, 2024
333
November, 2021
289
June, 2020
286
September, 2023
May, 2020
128
August, 2021
128
March, 2020
106
January, 2022
101
October, 2022
83
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
35
August, 2017
32
February, 2023
30
March, 2024
19
April, 2020
13
November, 2019
9
August, 2018
9
October, 2019
3
November, 2020
3
September, 2018
2
January, 2018
2
May, 2024
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
5503
bed bed3+
bed bed9
812
tsv
480
bigWig
108
txt
34
bed bed9+
32
bigBed bed9
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6544
Homo sapiens
Biosample type
2108
cell line
2078
tissue
1965
primary cell
389
in vitro differentiated cells
4
stem cell
Organ
850
epithelium
556
kidney
393
connective tissue
370
brain
293
musculature of body
237
lung
228
intestine
225
pancreas
217
vasculature
195
heart
189
bodily fluid
183
limb
181
embryo
180
blood
165
skin of body
164
blood vessel
136
large intestine
136
liver
110
extraembryonic component
98
eye
94
stomach
77
uterus
75
adipose tissue
74
bone element
71
mammary gland
64
small intestine
63
prostate gland
61
artery
57
adrenal gland
56
placenta
53
lymph node
53
penis
48
ureter
41
gonad
38
esophagus
36
thymus
34
spinal cord
27
spleen
22
testis
19
lymphatic vessel
19
lymphoid tissue
19
nerve
18
ovary
18
thyroid gland
16
vein
15
mouth
15
skeleton
14
bronchus
11
bone marrow
10
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
3
pituitary gland
1
pericardium
Project
5837
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
5667
hg19
902
GRCh38
4
hg18
files.file_type!
bed bed9
month_released!
May, 2020
May, 2021
BIOSAMPLE
TYPE
6546 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
gene expression
eQTL
differential activity
chromatin state
Fine-mapped variants
variant allelic effects
caQTL
variant to gene
pQTL
sQTL
other
representative DNase hypersensitivity sites
cell line
HeLa-S3
5
54
1
H1-hESC
1
38
1
1
2
8
A549
21
18
1
1
2
K562
7
22
1
1
2
1
MCF-7
9
5
2
1
3
+ See 763 more…
tissue
heart
37
20
1
5
1
3
stomach
40
19
1
3
1
1
kidney
29
14
2
10
1
7
1
brain
29
16
3
2
1
1
2
lung
33
17
1
1
+ See 254 more…
primary cell
common myeloid progenitor, CD34-positive
27
13
endothelial cell
7
1
15
2
8
1
2
2
hepatocyte
1
2
4
8
1
13
1
fibroblast
4
16
1
2
6
B cell
14
8
4
+ See 428 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
2
1
4
1
1
4
cardiomyocytes
11
extended pluripotent stem (EPS) cells
9
+ See 108 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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