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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1655
candidate regulatory elements
1345
target gene predictions
971
histone modifications
855
accessible chromatin
808
binding sites
674
gene expression
165
differential activity
165
eQTL
134
variant allelic effects
74
chromatin state
68
Fine-mapped variants
11
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
pQTL
2
other
1
representative DNase hypersensitivity sites
Date released
2568
February, 2021
1659
September, 2022
381
May, 2021
378
February, 2024
333
November, 2021
285
June, 2020
281
September, 2023
128
August, 2021
121
March, 2020
103
January, 2022
100
May, 2020
99
October, 2022
79
January, 2020
70
March, 2023
59
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
34
August, 2017
29
March, 2024
28
February, 2023
19
April, 2020
11
November, 2019
9
August, 2018
9
October, 2019
3
November, 2020
3
September, 2018
2
January, 2018
2
May, 2024
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
5814
bed bed3+
882
tsv
bed bed9
492
bigWig
108
txt
36
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6948
Homo sapiens
Biosample type
2219
primary cell
2167
cell line
2127
tissue
430
in vitro differentiated cells
4
stem cell
Organ
899
epithelium
575
kidney
419
connective tissue
399
brain
304
musculature of body
264
pancreas
241
lung
234
intestine
234
vasculature
209
heart
194
limb
193
bodily fluid
188
embryo
184
blood
177
blood vessel
170
skin of body
142
liver
141
large intestine
113
extraembryonic component
100
eye
96
stomach
81
adipose tissue
79
uterus
75
bone element
73
mammary gland
artery
65
prostate gland
65
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
testis
21
nerve
19
lymphatic vessel
19
lymphoid tissue
19
ovary
19
thyroid gland
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
12
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
6245
AMP
333
ENCODE
276
KPMP
59
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
5979
hg19
985
GRCh38
4
hg18
files.file_type!
bed bed9
organ_slims!
artery
vein
BIOSAMPLE
TYPE
6948 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
gene expression
differential activity
eQTL
variant allelic effects
chromatin state
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
pQTL
other
representative DNase hypersensitivity sites
primary cell
monocyte
2
86
16
1
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
2
3
1
common myeloid progenitor, CD34-positive
27
14
endothelial cell
7
1
15
2
9
1
2
2
hepatocyte
1
3
4
8
1
13
2
+ See 441 more…
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
1
2
8
A549
21
19
1
1
2
K562
7
23
1
1
2
1
EndoC_BH1
1
1
8
1
8
3
1
+ See 763 more…
tissue
heart
37
20
1
5
1
3
2
stomach
40
21
1
3
1
1
kidney
29
14
2
10
1
7
1
1
brain
29
16
3
2
1
1
2
1
lung
33
17
1
1
+ See 255 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
4
1
1
4
cardiomyocytes
11
embryonic stem cell
1
1
6
1
+ See 121 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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