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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1455
candidate regulatory elements
1198
target gene predictions
960
histone modifications
851
accessible chromatin
797
binding sites
471
gene expression
167
eQTL
124
variant allelic effects
111
differential activity
74
Fine-mapped variants
74
chromatin state
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2349
February, 2021
1474
September, 2022
377
May, 2021
328
November, 2021
326
February, 2024
264
June, 2020
146
September, 2023
133
May, 2020
124
March, 2020
105
January, 2022
98
October, 2022
92
August, 2021
70
March, 2023
69
January, 2020
56
January, 2021
55
February, 2020
49
May, 2022
44
November, 2022
34
August, 2017
32
February, 2023
28
March, 2024
19
April, 2020
13
November, 2019
9
August, 2018
9
October, 2019
3
November, 2020
3
September, 2018
2
January, 2018
2
May, 2024
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
5436
bed bed3+
bed bed9
639
tsv
508
bigWig
38
bigBed bed9
34
bed bed9+
24
csv
21
txt
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6271
Homo sapiens
Biosample type
2022
cell line
1989
primary cell
1898
tissue
405
in vitro differentiated cells
3
stem cell
Organ
899
epithelium
kidney
419
connective tissue
400
brain
304
musculature of body
264
pancreas
241
lung
234
intestine
234
vasculature
209
heart
194
limb
193
bodily fluid
embryo
184
blood
177
blood vessel
170
skin of body
142
liver
141
large intestine
113
extraembryonic component
100
eye
96
stomach
81
adipose tissue
79
uterus
75
bone element
73
mammary gland
67
artery
65
prostate gland
65
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
testis
21
nerve
19
lymphatic vessel
19
lymphoid tissue
19
ovary
19
thyroid gland
19
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
12
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
5755
AMP
328
ENCODE
141
KPMP
60
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
5607
hg19
926
GRCh38
4
hg18
files.file_type!
bed bed9
organ_slims!
kidney
embryo
BIOSAMPLE
TYPE
6319 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
gene expression
eQTL
variant allelic effects
differential activity
Fine-mapped variants
chromatin state
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
cell line
HeLa-S3
5
55
1
A549
21
19
1
1
2
K562
7
23
1
1
2
1
EndoC_BH1
1
1
8
1
8
1
3
MCF-7
9
6
2
1
3
+ See 734 more…
primary cell
monocyte
2
86
18
1
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
3
1
common myeloid progenitor, CD34-positive
27
14
endothelial cell
7
1
15
2
9
1
2
2
B cell
14
10
6
2
+ See 377 more…
tissue
heart
37
20
1
5
1
3
2
stomach
40
21
1
3
1
1
brain
29
16
3
2
1
1
2
1
lung
33
17
1
1
muscle of arm
33
16
1
1
+ See 235 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
4
1
1
4
cardiomyocytes
11
embryonic stem cell
1
1
6
1
+ See 112 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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