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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
68
candidate regulatory elements
42
target gene predictions
10
accessible chromatin
6
binding sites
5
histone modifications
3
chromatin state
2
eQTL
2
gene expression
Date released
65
September, 2022
46
February, 2021
7
June, 2020
6
November, 2021
5
May, 2021
3
August, 2017
February, 2024
2
January, 2022
2
March, 2024
1
March, 2020
1
October, 2022
Available data
134
bed bed3+
bed bed9
3
bigWig
2
tsv
Organism
138
Homo sapiens
Biosample type
104
tissue
28
cell line
6
primary cell
Organ
823
epithelium
574
kidney
401
connective tissue
399
brain
289
musculature of body
240
lung
239
pancreas
228
intestine
217
vasculature
204
heart
194
limb
169
skin of body
165
bodily fluid
162
blood vessel
156
blood
138
large intestine
137
embryo
113
extraembryonic component
113
liver
99
eye
94
stomach
79
adipose tissue
75
bone element
72
mammary gland
67
artery
65
small intestine
64
prostate gland
58
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
thymus
36
esophagus
spinal cord
28
spleen
28
uterus
22
testis
21
nerve
19
lymphatic vessel
19
ovary
19
vein
18
lymphoid tissue
18
thyroid gland
15
mouth
15
skeleton
13
bronchus
13
pituitary gland
12
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
132
AMP
6
ENCODE
Genome assembly (visualization)
134
hg19
8
GRCh38
files.file_type!
bed bed9
organ_slims!
spinal cord
month_released!
February, 2024
BIOSAMPLE
TYPE
138 results
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candidate regulatory elements
target gene predictions
accessible chromatin
binding sites
histone modifications
chromatin state
eQTL
gene expression
tissue
large intestine
26
14
1
1
sigmoid colon
10
7
1
transverse colon
8
5
1
1
colonic mucosa
4
2
1
1
mucosa of rectum
4
2
1
+ See 7 more…
cell line
HT-29
2
2
1
1
1
SW480
2
1
1
1
1
HCT-116 cell
1
1
2
RKO
1
1
1
1
HCT116
2
1
+ See 3 more…
primary cell
colon epithelial cell
3
3
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