Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
73
candidate regulatory elements
55
gene expression
54
accessible chromatin
52
target gene predictions
28
binding sites
22
histone modifications
19
differential activity
19
variant allelic effects
14
eQTL
12
Fine-mapped variants
4
caQTL
4
chromatin state
Date released
83
September, 2022
75
February, 2021
35
September, 2023
32
February, 2024
22
March, 2020
17
May, 2020
15
January, 2020
11
August, 2021
11
June, 2020
9
November, 2021
7
February, 2020
6
May, 2021
5
October, 2022
4
August, 2017
4
February, 2023
4
January, 2022
4
March, 2023
4
November, 2019
3
April, 2020
2
May, 2022
1
July, 2020
1
March, 2024
1
September, 2018
Available data
252
bed bed3+
84
tsv
48
bigWig
bed bed9
9
bigBed bed9
3
csv
2
txt
1
bam
Organism
356
Homo sapiens
Biosample type
194
primary cell
118
tissue
36
cell line
8
in vitro differentiated cells
Organ
899
epithelium
575
kidney
417
connective tissue
400
brain
304
musculature of body
264
pancreas
241
lung
234
intestine
234
vasculature
209
heart
194
limb
193
bodily fluid
188
embryo
184
blood
177
blood vessel
170
skin of body
142
liver
141
large intestine
113
extraembryonic component
100
eye
96
stomach
81
adipose tissue
79
uterus
75
bone element
73
mammary gland
67
artery
65
prostate gland
65
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
testis
21
nerve
19
lymphatic vessel
19
lymphoid tissue
19
ovary
19
thyroid gland
19
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
12
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
309
AMP
35
KPMP
9
ENCODE
3
LungMap
Genome assembly (visualization)
270
hg19
85
GRCh38
2
hg18
files.file_type!
bed bed9
BIOSAMPLE
TYPE
356 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
gene expression
accessible chromatin
target gene predictions
binding sites
histone modifications
differential activity
variant allelic effects
eQTL
Fine-mapped variants
caQTL
chromatin state
primary cell
hepatocyte
1
13
8
3
1
4
2
endothelial cell of hepatic sinusoid
4
6
6
endothelial cell of umbilical vein
6
2
4
2
1
1
dermis blood vessel endothelial cell
6
2
hepatic stellate cell
1
1
3
1
1
1
+ See 30 more…
tissue
liver
13
1
4
10
1
2
1
7
1
2
coronary artery
3
1
3
3
2
2
3
1
tibial artery
3
1
3
2
2
2
3
ascending aorta
4
1
1
2
1
1
3
aorta
4
1
4
+ See 6 more…
cell line
HepG2
2
2
3
3
5
1
HuH-7
1
1
1
1
1
smooth muscle cell of the coronary artery
1
1
1
1
choroid plexus epithelial cell
1
1
1
HuH-7.5
1
1
+ See 3 more…
in vitro differentiated cells
hepatocyte
2
1
hepatocyte(AFP)
3
dermis microvascular lymphatic vessel endothelial cell
1
1
See all biosamples
Download