Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
254
gene expression
214
accessible chromatin
130
target gene predictions
115
candidate regulatory elements
92
differential activity
44
binding sites
41
variant allelic effects
28
histone modifications
4
eQTL
3
chromatin state
2
caQTL
Date released
206
February, 2021
155
September, 2023
127
November, 2021
115
September, 2022
76
February, 2024
38
March, 2023
35
May, 2021
26
June, 2020
23
August, 2021
20
January, 2021
15
May, 2020
15
November, 2022
12
February, 2023
12
January, 2020
9
February, 2020
7
April, 2020
7
March, 2020
6
August, 2018
6
October, 2022
5
October, 2019
3
August, 2017
3
March, 2024
2
May, 2022
2
November, 2019
1
January, 2022
1
July, 2020
Available data
573
bed bed3+
325
tsv
177
bigWig
78
txt
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
927
Homo sapiens
Biosample type
775
primary cell
85
tissue
42
cell line
25
in vitro differentiated cells
Organ
899
epithelium
575
kidney
417
connective tissue
400
brain
304
musculature of body
264
pancreas
241
lung
234
intestine
234
vasculature
209
heart
194
limb
193
bodily fluid
188
embryo
184
blood
177
blood vessel
170
skin of body
142
liver
141
large intestine
113
extraembryonic component
100
eye
96
stomach
81
adipose tissue
79
uterus
75
bone element
73
mammary gland
67
artery
65
prostate gland
65
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
testis
21
nerve
19
lymphatic vessel
19
lymphoid tissue
19
ovary
19
thyroid gland
19
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
12
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
616
AMP
155
KPMP
127
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
576
hg19
186
GRCh38
files.file_type!
bed bed9
BIOSAMPLE
TYPE
927 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
differential activity
binding sites
variant allelic effects
histone modifications
eQTL
chromatin state
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
hepatocyte
13
8
3
1
1
2
4
epithelial cell of proximal tubule
16
1
1
2
1
1
glomerular endothelial cell
14
2
1
2
1
pancreatic ductal cell
3
6
3
3
1
1
2
+ See 146 more…
tissue
spleen
1
2
8
15
1
1
pigmented layer of retina
20
breast epithelium
1
3
5
esophagus squamous epithelium
1
2
6
kidney epithelium
1
1
+ See 16 more…
cell line
EndoC_BH1
8
8
1
3
1
keratinocyte
3
1
choroid plexus epithelial cell
1
1
1
epithelial cell of prostate
1
1
1
colon epithelial cell
1
1
+ See 6 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
foreskin keratinocyte
1
1
1
hepatocyte
1
2
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 4 more…
See all biosamples
Download