Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
37
candidate regulatory elements
11
target gene predictions
10
accessible chromatin
6
binding sites
5
histone modifications
3
chromatin state
2
eQTL
2
gene expression
Date released
September, 2022
46
February, 2021
7
June, 2020
6
November, 2021
5
May, 2021
3
August, 2017
3
February, 2024
2
January, 2022
2
March, 2024
1
March, 2020
1
October, 2022
Available data
72
bed bed3+
3
bigWig
2
tsv
Organism
76
Homo sapiens
Biosample type
48
tissue
22
cell line
6
primary cell
Organ
796
epithelium
425
kidney
336
connective tissue
280
brain
231
pancreas
183
vasculature
168
musculature of body
143
bodily fluid
138
blood
137
heart
136
blood vessel
134
embryo
125
intestine
109
liver
102
limb
102
skin of body
101
lung
82
eye
76
large intestine
71
uterus
64
adipose tissue
52
artery
50
stomach
47
bone element
47
extraembryonic component
45
mammary gland
39
prostate gland
38
lymph node
34
penis
31
adrenal gland
27
small intestine
26
gonad
25
placenta
25
ureter
24
esophagus
19
spinal cord
16
spleen
16
thymus
15
lymphatic vessel
15
nerve
15
vein
14
testis
13
pituitary gland
11
ovary
11
thyroid gland
10
bone marrow
10
bronchus
9
lymphoid tissue
9
skeleton
7
breast
7
mouth
5
trachea
4
tongue
4
urinary bladder
4
vagina
1
nose
1
pericardium
Project
70
AMP
6
ENCODE
Genome assembly (visualization)
72
hg19
10
GRCh38
files.file_type!
bigBed bed9
month_released!
September, 2022
BIOSAMPLE
TYPE
76 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
binding sites
histone modifications
chromatin state
eQTL
gene expression
tissue
large intestine
15
1
1
1
sigmoid colon
5
2
1
transverse colon
4
1
1
1
colonic mucosa
2
1
1
mucosa of rectum
2
1
+ See 7 more…
cell line
HT-29
1
1
1
1
1
HCT-116 cell
1
1
2
RKO
1
1
1
1
SW480
1
1
1
1
HCT116
1
2
+ See 2 more…
primary cell
colon epithelial cell
3
3
See all biosamples
Download