Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
76
candidate regulatory elements
56
gene expression
55
accessible chromatin
55
target gene predictions
43
chromatin state
28
binding sites
22
histone modifications
19
differential activity
19
variant allelic effects
14
eQTL
12
Fine-mapped variants
4
caQTL
Date released
127
September, 2022
76
February, 2021
35
September, 2023
32
February, 2024
23
March, 2020
17
May, 2020
15
January, 2020
12
June, 2020
11
August, 2021
9
November, 2021
7
February, 2020
6
May, 2021
5
October, 2022
4
February, 2023
4
January, 2022
4
March, 2023
4
November, 2019
3
April, 2020
3
August, 2017
2
March, 2024
2
May, 2022
1
July, 2020
1
September, 2018
Available data
259
bed bed3+
85
tsv
48
bed bed9
48
bigWig
bigBed bed9
3
csv
2
txt
1
bam
Organism
403
Homo sapiens
Biosample type
210
primary cell
145
tissue
39
cell line
9
in vitro differentiated cells
Organ
947
epithelium
650
kidney
460
brain
458
connective tissue
372
musculature of body
311
lung
289
intestine
275
pancreas
258
vasculature
245
heart
240
limb
218
bodily fluid
215
embryo
207
blood
204
skin of body
196
blood vessel
174
large intestine
155
liver
146
extraembryonic component
119
stomach
109
eye
89
bone element
88
adipose tissue
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
73
adrenal gland
73
artery
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
24
lymphoid tissue
24
nerve
23
ovary
23
thyroid gland
21
lymphatic vessel
21
vein
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
356
AMP
35
KPMP
9
ENCODE
3
LungMap
Genome assembly (visualization)
316
hg19
125
GRCh38
2
hg18
files.file_type!
bigBed bed9
BIOSAMPLE
TYPE
403 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
gene expression
accessible chromatin
target gene predictions
chromatin state
binding sites
histone modifications
differential activity
variant allelic effects
eQTL
Fine-mapped variants
caQTL
primary cell
hepatocyte
1
13
8
3
1
1
4
2
endothelial cell of umbilical vein
6
2
4
3
2
1
endothelial cell of hepatic sinusoid
4
6
6
dermis blood vessel endothelial cell
6
2
2
hepatic stellate cell
1
1
3
1
1
1
1
+ See 30 more…
tissue
liver
13
1
4
10
8
1
2
1
7
1
coronary artery
3
1
3
3
2
2
2
3
1
tibial artery
3
1
3
2
2
2
2
3
ascending aorta
4
1
1
2
2
1
1
3
aorta
4
1
4
2
+ See 9 more…
cell line
HepG2
2
2
3
2
3
5
HuH-7
1
1
1
1
1
1
smooth muscle cell of the coronary artery
1
1
1
1
HuH-7.5
1
1
1
choroid plexus epithelial cell
1
1
1
+ See 3 more…
in vitro differentiated cells
hepatocyte
2
1
1
hepatocyte(AFP)
3
dermis microvascular lymphatic vessel endothelial cell
1
1
See all biosamples
Download