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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
326
accessible chromatin
321
gene expression
286
candidate regulatory elements
271
target gene predictions
171
chromatin state
106
differential activity
100
histone modifications
87
binding sites
65
variant allelic effects
53
eQTL
42
Fine-mapped variants
4
caQTL
2
pQTL
Date released
444
September, 2022
407
February, 2021
177
November, 2021
175
September, 2023
85
February, 2024
64
June, 2020
61
May, 2021
53
March, 2020
47
January, 2020
45
March, 2023
39
May, 2020
36
February, 2020
34
August, 2021
24
January, 2022
22
January, 2021
22
November, 2022
22
October, 2022
16
August, 2017
13
February, 2023
10
April, 2020
7
August, 2018
7
October, 2019
5
May, 2022
4
May, 2019
3
March, 2024
3
November, 2020
2
May, 2024
2
November, 2019
2
September, 2018
1
January, 2018
1
July, 2020
Available data
1162
bed bed3+
456
tsv
246
bigWig
155
bed bed9
85
txt
bigBed narrowPeak
10
bigBed bed9
6
csv
3
bam
3
bed gappedPeak
3
xls
Organism
1833
Homo sapiens
Biosample type
1100
primary cell
505
tissue
147
cell line
80
in vitro differentiated cells
2
stem cell
Organ
935
epithelium
652
kidney
466
brain
459
connective tissue
375
musculature of body
311
lung
289
intestine
266
vasculature
263
pancreas
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
1447
AMP
177
ENCODE
170
KPMP
22
T1D
10
LungMap
4
ITG
4
community
Genome assembly (visualization)
1369
hg19
500
GRCh38
2
hg18
files.file_type!
bigBed narrowPeak
BIOSAMPLE
TYPE
1834 results
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table-tab-icon
Clear Filters
accessible chromatin
gene expression
candidate regulatory elements
target gene predictions
chromatin state
differential activity
histone modifications
binding sites
variant allelic effects
eQTL
Fine-mapped variants
caQTL
pQTL
primary cell
endothelial cell
15
9
7
1
2
2
1
2
hepatocyte
8
13
1
3
1
4
1
2
fibroblast
16
4
1
6
2
epithelial cell of proximal tubule
1
16
2
1
1
1
1
pericyte cell
10
1
10
1
+ See 198 more…
tissue
brain
2
1
29
16
18
3
1
1
2
adipose tissue
2
3
7
8
6
1
1
4
caudate nucleus
2
1
5
3
4
1
1
2
3
subcutaneous adipose tissue
2
5
2
1
1
1
6
3
pigmented layer of retina
20
+ See 87 more…
cell line
EndoC_BH1
8
8
1
3
1
SK-N-DZ
1
4
2
2
1
SK-N-SH
4
3
2
1
pituitary stalk
10
SK-N-MC
1
2
1
1
1
2
+ See 30 more…
in vitro differentiated cells
adipocyte
4
1
4
6
6
1
1
mesenchymal stem cell
1
3
3
2
1
1
retinal pigment epithelial cell
6
chondrocyte
5
hepatocyte
2
1
1
+ See 20 more…
stem cell
mesenchymal stem cell
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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