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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
328
candidate regulatory elements
298
gene expression
230
target gene predictions
210
histone modifications
197
chromatin state
100
binding sites
89
accessible chromatin
77
variant allelic effects
44
eQTL
42
differential activity
9
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
484
September, 2022
452
February, 2021
243
May, 2021
126
February, 2024
55
March, 2023
53
June, 2020
40
May, 2020
36
January, 2022
33
May, 2022
29
August, 2021
29
October, 2022
16
February, 2020
9
August, 2018
9
November, 2022
6
August, 2017
5
March, 2020
4
February, 2023
2
January, 2020
2
October, 2019
1
July, 2020
1
March, 2024
1
November, 2020
Available data
1184
bed bed3+
308
tsv
164
bed bed9
bigWig
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1635
Homo sapiens
Biosample type
2527
tissue
2339
cell line
1636
primary cell
458
in vitro differentiated cells
4
stem cell
Organ
454
epithelium
201
connective tissue
151
kidney
111
vasculature
90
skin of body
80
blood vessel
69
pancreas
42
liver
41
penis
40
mammary gland
37
extraembryonic component
35
musculature of body
27
brain
22
artery
22
lung
21
heart
20
embryo
19
vein
18
eye
13
bronchus
11
bone element
10
bone marrow
10
prostate gland
9
blood
9
bodily fluid
8
lymphatic vessel
8
placenta
6
esophagus
5
trachea
4
intestine
4
mouth
4
spinal cord
3
uterus
2
gonad
2
stomach
1
adipose tissue
1
adrenal gland
1
limb
1
pericardium
1
testis
1
thyroid gland
Project
1636
AMP
281
KPMP
111
ENCODE
31
T1D
Genome assembly (visualization)
1262
hg19
313
GRCh38
files.file_type!
bigWig
BIOSAMPLE
TYPE
1636 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
gene expression
target gene predictions
histone modifications
chromatin state
binding sites
accessible chromatin
variant allelic effects
eQTL
differential activity
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
15
1
86
1
2
4
2
1
1
common myeloid progenitor, CD34-positive
27
14
13
CD8-positive, alpha-beta T cell
7
3
3
30
1
B cell
14
2
10
8
CD4-positive, alpha-beta memory T cell
14
9
9
CD14-positive monocyte
8
19
4
regulatory T cell
5
7
3
1
3
1
2
2
CD8-positive, alpha-beta memory T cell
8
7
7
epithelial cell of proximal tubule
2
16
1
1
1
1
T-helper 1 cell
6
7
3
3
1
1
glomerular endothelial cell
2
14
1
1
1
1
hepatocyte
1
8
2
4
1
1
1
2
mononuclear cell
7
6
6
1
T-helper 17 cell
5
7
3
3
1
endothelial cell
9
1
2
2
2
1
2
endothelial cell of umbilical vein
6
4
5
2
1
1
foreskin keratinocyte
11
4
4
trophoblast cell
7
5
1
4
1
T cell
4
4
4
1
2
2
natural killer cell
6
2
4
1
3
1
fibroblast of lung
6
4
4
2
foreskin fibroblast
6
2
2
1
4
1
T-helper 2 cell
5
3
3
3
1
macrophage
2
1
1
3
7
1
neutrophil
4
3
2
2
2
1
1
skeletal muscle myoblast
4
1
2
1
3
2
1
1
osteoblast
2
2
2
2
1
3
2
CD4-positive, alpha-beta T cell
8
2
3
keratinocyte
3
3
2
3
1
1
mammary epithelial cell
3
1
3
1
4
1
neurosphere
7
3
3
bronchial epithelial cell
4
2
1
2
2
1
fibroblast of dermis
4
4
3
1
naive thymus-derived CD4-positive, alpha-beta T cell
4
1
1
2
1
1
1
1
pancreatic ductal cell
3
1
2
1
1
1
3
fibroblast
1
2
6
2
mammary gland epithelial cell
3
3
3
1
1
dermis blood vessel endothelial cell
6
2
2
endothelial cell of hepatic sinusoid
6
4
glomerular visceral epithelial cell
2
5
1
1
1
epithelial cell of prostate
4
3
2
fibroblast of cardiac tissue
3
3
3
kidney tubule cell
3
1
2
2
1
mature neutrophil
1
7
1
naive T cell
3
3
3
fibroblast of breast
4
2
2
fibroblast of mammary gland
2
1
1
1
2
1
fibroblast of pulmonary artery
2
1
1
1
2
1
fibroblast of villous mesenchyme
2
1
1
1
2
1
myoepithelial cell of mammary gland
4
2
2
pancreatic acinar cell
3
1
1
3
retinal pigment epithelial cell
2
1
1
1
2
1
skeletal muscle satellite cell
2
2
1
2
1
CD1c-positive myeloid dendritic cell
2
1
1
1
1
1
astrocyte
2
1
2
1
1
hepatic stellate cell
1
1
1
1
1
1
1
kidney glomerular epithelial cell
2
1
1
1
1
1
kidney loop of Henle thin ascending limb epithelial cell
7
pancreatic alpha cell
3
1
3
pancreatic beta cell
3
1
3
pancreatic delta cell
3
1
3
pulmonary artery endothelial cell
2
1
1
1
1
1
renal cortical epithelial cell
2
1
1
1
1
1
skin fibroblast
2
2
2
1
smooth muscle cell
1
2
2
1
1
T-cell
4
2
alternatively activated macrophage
1
1
4
cardiac muscle cell
2
1
1
2
choroid plexus epithelial cell
2
1
1
1
1
dermis lymphatic vessel endothelial cell
2
2
2
epithelial cell of esophagus
2
1
1
2
erythroblast
2
2
2
foreskin melanocyte
4
1
1
kidney epithelial cell
2
1
1
1
1
kidney interstitial cell
6
mesenchymal stem cell
1
1
1
1
1
1
olfactory receptor cell
6
peripheral blood mononuclear cell
4
1
1
skeletal muscle fiber
2
2
2
CD14-positive, CD16-negative classical monocyte
5
astrocyte of the cerebellum
2
1
1
1
astrocyte of the hippocampus
2
1
1
1
fibroblast of peridontal ligament
2
1
1
1
fibroblast of the aortic adventitia
2
1
1
1
inflammatory macrophage
1
1
3
iris pigment epithelial cell
2
1
1
1
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
3
1
1
mesangial cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
3
1
1
non-pigmented ciliary epithelial cell
2
1
1
1
pancreatic stellate cell
2
3
skeletal muscle cell
2
1
1
1
smooth muscle cell of the brain vasculature
2
1
1
1
tracheal epithelial cell
2
2
1
acute myeloid leukemia cell
2
2
adult endothelial progenitor cell
3
1
aortic adventitial fibroblast
1
2
1
astrocyte of the spinal cord
2
1
1
brain microvascular endothelial cell
2
1
1
cardiac fibroblast
3
1
fibroblast of gingiva
2
1
1
fibroblast of the conjunctiva
2
1
1
gamma-delta T cell
4
glutamatergic neuron
4
kidney capillary endothelial cell
1
1
1
1
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
mast cell
1
1
1
1
myofibroblast cell
1
3
nephron progenitor
4
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic endothelial cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
preadipocyte
2
1
1
renal epithelial cell
1
2
1
stromal cell of bone marrow
2
1
1
type I muscle cell
1
1
1
1
type II muscle cell
1
1
1
1
vascular associated smooth muscle cell
2
2
Ishikawa
1
1
1
S-shaped body
3
Schwann cell
1
2
T follicular helper cell
2
1
Th1 cell
1
1
1
Th17 cell
1
1
1
adipocyte
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
blood cell
3
bone marrow cell
1
2
central memory CD8-positive, alpha-beta T cell
3
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
leukocyte
2
1
luminal epithelial cell of mammary gland
1
1
1
mammary stem cell
1
1
1
memory B cell
3
meso-epithelial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cel
2
1
neoplastic cell
1
1
1
pancreatic quiescent stellate cell
3
pericyte cell
1
1
1
peripheral blood stem cell
1
1
1
plasma cell
1
1
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
smooth muscle cell of the coronary artery
1
1
1
cardiac fibroblast
2
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive helper T cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Kupffer cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
activated CD4-positive, alpha-beta T cell
1
1
aortic endothelial cell
1
1
basal cell
2
brain pericyte
1
1
cardiac muscle myoblast
1
1
chronic lymphocytic leukemia cell
1
1
columnar chondrocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD4-positive, alpha-beta T cell
1
1
endothelial cell of coronary artery
1
1
erythroid progenitor cell
1
1
glial cell
1
1
goblet cell
2
head and neck squamous cell carcinoma
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
mantle cell lymphoma cell
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
naive B cell
1
1
naive regulatory T cell
1
1
neural cell
1
1
neuronal stem cell
1
1
pancreatic endocrine cell
1
1
pancreatic polypeptide-secreting cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
small cell ovarian carcinoma cell
1
1
somatic muscle myotube
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD8-positive, alpha-beta T cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cholangiocyte
1
colorectal cancer
1
cortical cell of adrenal gland
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
epithelial cell of distal tubule
1
erythroid lineage cell
1
fat cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gabaergic neuron
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mature B cell
1
mature eosinophil
1
megakaryocyte
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
mesothelial cell
1
microglial cell
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
naive t cell
1
neural progenitor cell
1
neuron
1
neutrophil progenitor cell
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic A cell
1
pancreatic cell
1
pancreatic epsilon cell
1
parietal cell
1
peptic cell
1
pericardium fibroblast
1
peripheral blood
1
progenitor cell
1
proximal tubule
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal principal cell
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
thyroid follicular cell
1
type B pancreatic cell
1
type II pneumocyte
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
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