Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1215
target gene predictions
976
histone modifications
817
binding sites
376
accessible chromatin
119
variant allelic effects
40
chromatin state
11
caQTL
10
eQTL
3
hQTL
2
meQTL
2
other
2
variant to gene
1
pQTL
1
sQTL
Date released
2395
February, 2021
1674
September, 2022
288
June, 2020
272
May, 2021
265
February, 2024
99
October, 2022
82
May, 2020
45
March, 2020
34
August, 2017
31
August, 2021
30
November, 2022
11
February, 2023
8
May, 2022
5
September, 2023
1
April, 2019
1
August, 2020
1
August, 2022
1
January, 2020
1
January, 2022
1
November, 2019
Available data
5510
bed bed3+
869
bed bed9
617
tsv
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
5245
Homo sapiens
Biosample type
2121
cell line
1731
tissue
1054
primary cell
335
in vitro differentiated cells
4
stem cell
Organ
323
epithelium
288
brain
274
kidney
262
musculature of body
255
connective tissue
227
lung
209
intestine
190
bodily fluid
181
blood
176
embryo
161
limb
155
skin of body
148
heart
136
vasculature
131
large intestine
109
extraembryonic component
105
blood vessel
87
pancreas
86
liver
84
stomach
74
uterus
67
mammary gland
63
prostate gland
62
eye
60
small intestine
59
bone element
54
lymph node
54
penis
54
placenta
48
ureter
47
adrenal gland
44
adipose tissue
38
artery
37
thymus
35
gonad
29
esophagus
29
spinal cord
25
spleen
19
testis
18
lymphoid tissue
16
vein
15
ovary
15
thyroid gland
13
mouth
12
nerve
11
bronchus
11
pituitary gland
10
lymphatic vessel
9
breast
8
bone marrow
7
skeleton
7
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
Project
5246
AMP
111
ENCODE
32
T1D
1
ITG
Genome assembly (visualization)
5240
hg19
315
GRCh38
1
hg18
files.file_type!
bigWig
BIOSAMPLE
TYPE
5246 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
accessible chromatin
variant allelic effects
chromatin state
caQTL
eQTL
hQTL
meQTL
other
variant to gene
pQTL
sQTL
cell line
HeLa-S3
5
55
1
A549
21
19
1
2
1
H1-hESC
1
39
1
2
1
K562
7
23
1
2
1
1
MCF-7
9
6
2
3
1
+ See 760 more…
tissue
stomach
40
21
1
3
heart
37
20
1
1
2
2
brain
29
16
3
1
1
1
lung
33
17
muscle of arm
33
16
1
+ See 198 more…
primary cell
monocyte
1
86
1
2
1
1
common myeloid progenitor, CD34-positive
27
14
CD8-positive, alpha-beta T cell
7
3
30
CD14-positive monocyte
8
19
B cell
14
10
+ See 226 more…
in vitro differentiated cells
neural progenitor cell
5
5
14
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
1
3
4
mesenchymal stem cell
3
3
1
1
1
T-cell acute lymphoblastic leukemia
5
3
+ See 99 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download