Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
86
candidate regulatory elements
55
target gene predictions
44
chromatin state
11
accessible chromatin
9
binding sites
6
histone modifications
5
eQTL
4
gene expression
Date released
122
September, 2022
58
February, 2021
11
June, 2020
6
May, 2021
5
January, 2022
4
March, 2024
4
November, 2021
3
August, 2017
3
February, 2024
2
March, 2020
2
October, 2022
Available data
174
bed bed3+
41
bed bed9
bigWig
4
tsv
Organism
220
Homo sapiens
Biosample type
173
tissue
41
cell line
6
primary cell
Organ
773
epithelium
616
kidney
444
brain
405
connective tissue
359
musculature of body
302
lung
278
intestine
235
vasculature
233
heart
230
limb
220
pancreas
218
bodily fluid
213
embryo
207
blood
199
skin of body
181
blood vessel
171
large intestine
143
extraembryonic component
133
liver
114
stomach
84
adipose tissue
84
mammary gland
82
small intestine
82
uterus
79
bone element
78
prostate gland
73
eye
71
placenta
67
adrenal gland
66
artery
64
penis
62
lymph node
61
ureter
49
gonad
48
thymus
43
esophagus
43
spinal cord
33
spleen
26
testis
24
lymphoid tissue
23
nerve
22
ovary
22
thyroid gland
22
vein
19
mouth
18
lymphatic vessel
14
bronchus
13
breast
13
pituitary gland
11
bone marrow
10
skeleton
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
216
AMP
4
ENCODE
Genome assembly (visualization)
211
hg19
52
GRCh38
files.file_type!
bigWig
BIOSAMPLE
TYPE
220 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
binding sites
histone modifications
eQTL
gene expression
tissue
large intestine
27
14
13
1
1
sigmoid colon
10
7
5
1
ovary
8
6
4
1
1
1
transverse colon
8
5
4
1
1
testis
7
3
3
1
1
1
1
1
+ See 9 more…
cell line
HT-29
2
2
1
1
1
1
SW480
2
1
1
1
1
1
HCT116
2
3
1
NT2-D1 cell
1
1
1
1
2
HCT-116 cell
1
1
2
+ See 5 more…
primary cell
colon epithelial cell
3
Leydig cell
1
luteal cell
1
somatic gonadal cell
1
See all biosamples
Download