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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1552
candidate regulatory elements
1222
target gene predictions
948
histone modifications
772
binding sites
694
accessible chromatin
387
gene expression
155
eQTL
96
variant allelic effects
73
differential activity
70
chromatin state
68
Fine-mapped variants
11
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2354
February, 2021
1559
September, 2022
347
May, 2021
300
February, 2024
263
June, 2020
206
November, 2021
134
May, 2020
131
September, 2023
114
March, 2020
103
January, 2022
95
October, 2022
86
August, 2021
67
January, 2020
50
February, 2020
47
May, 2022
36
January, 2021
32
March, 2023
30
August, 2017
28
March, 2024
28
November, 2022
20
February, 2023
12
April, 2020
12
November, 2019
4
October, 2019
3
August, 2018
3
November, 2020
2
May, 2024
1
April, 2019
1
August, 2020
1
August, 2022
1
January, 2018
1
June, 2021
1
September, 2018
Available data
5327
bed bed3+
bed bed9
554
tsv
365
bigWig
37
bigBed bed9
34
bed bed9+
txt
18
csv
2
bigBed narrowPeak
1
bam
Organism
6024
Homo sapiens
Biosample type
2128
cell line
2033
tissue
1501
primary cell
404
in vitro differentiated cells
4
stem cell
Organ
epithelium
488
kidney
412
connective tissue
400
brain
304
musculature of body
264
pancreas
241
lung
234
intestine
232
vasculature
209
heart
194
limb
193
bodily fluid
188
embryo
184
blood
177
blood vessel
170
skin of body
142
liver
141
large intestine
113
extraembryonic component
100
eye
96
stomach
adipose tissue
79
uterus
75
bone element
73
mammary gland
67
artery
65
prostate gland
65
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
testis
21
nerve
19
lymphatic vessel
19
lymphoid tissue
19
ovary
19
thyroid gland
19
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
12
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
5674
AMP
206
ENCODE
126
KPMP
40
T1D
12
LungMap
9
community
5
ITG
Genome assembly (visualization)
5484
hg19
808
GRCh38
2
hg18
files.file_type!
txt
bed bed9
organ_slims!
adipose tissue
epithelium
BIOSAMPLE
TYPE
6072 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
accessible chromatin
gene expression
eQTL
variant allelic effects
differential activity
chromatin state
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
2
1
8
A549
21
19
1
2
1
K562
7
23
1
2
1
1
MCF-7
9
6
2
3
1
+ See 753 more…
tissue
heart
37
20
1
1
5
3
2
stomach
40
21
1
3
1
1
kidney
29
14
2
1
10
7
1
1
brain
29
16
3
1
2
1
2
1
lung
33
17
1
1
+ See 233 more…
primary cell
monocyte
2
86
1
18
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
2
1
common myeloid progenitor, CD34-positive
27
14
B cell
14
10
6
2
fibroblast
4
1
16
2
6
+ See 289 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
4
1
4
cardiomyocytes
11
embryonic stem cell
1
1
1
6
+ See 111 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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