Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
937
candidate regulatory elements
518
target gene predictions
511
chromatin state
197
accessible chromatin
90
eQTL
89
histone modifications
48
variant allelic effects
36
binding sites
3
pQTL
2
Fine-mapped variants
2
caQTL
2
gene expression
2
sQTL
2
variant to gene
1
other
Date released
1377
September, 2022
613
February, 2021
63
June, 2020
60
May, 2020
56
January, 2022
45
January, 2020
37
August, 2021
31
May, 2021
30
March, 2020
26
February, 2023
21
February, 2024
19
August, 2017
17
November, 2022
10
November, 2019
9
May, 2019
8
April, 2019
5
October, 2019
4
March, 2023
3
September, 2018
2
May, 2022
1
August, 2020
1
August, 2022
1
February, 2020
Available data
1850
bed bed3+
486
bed bed9
tsv
120
bigWig
31
bigBed bed9
1
bam
Organism
2439
Homo sapiens
Biosample type
2440
tissue
2330
cell line
1877
primary cell
395
in vitro differentiated cells
4
stem cell
Organ
292
musculature of body
291
kidney
283
brain
229
intestine
219
limb
187
heart
180
lung
132
large intestine
106
stomach
98
extraembryonic component
97
pancreas
80
small intestine
69
connective tissue
68
eye
66
blood vessel
66
vasculature
64
ureter
62
adipose tissue
61
adrenal gland
60
placenta
59
epithelium
51
liver
48
thymus
37
gonad
35
embryo
33
esophagus
33
spleen
32
artery
31
spinal cord
23
skin of body
20
ovary
19
nerve
19
thyroid gland
18
bone element
18
skeleton
17
lymphoid tissue
17
testis
14
prostate gland
12
breast
11
uterus
10
mouth
9
tongue
9
urinary bladder
9
vagina
3
bodily fluid
2
blood
2
mammary gland
2
penis
2
pituitary gland
Project
2435
AMP
5
ITG
Genome assembly (visualization)
2362
hg19
637
GRCh38
3
hg18
files.file_type!
xls
tsv
BIOSAMPLE
TYPE
2440 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
eQTL
histone modifications
variant allelic effects
binding sites
pQTL
Fine-mapped variants
caQTL
gene expression
sQTL
variant to gene
other
tissue
heart
37
20
21
5
1
2
1
stomach
40
21
19
3
1
1
kidney
29
14
16
10
1
2
1
1
brain
29
16
18
2
2
3
1
1
lung
33
17
16
1
muscle of arm
33
16
16
1
1
small intestine
29
17
15
1
1
adrenal gland
28
17
14
1
1
placenta
26
15
14
1
1
2
1
muscle of leg
27
14
15
2
large intestine
27
14
13
1
1
muscle of back
28
13
13
left lung
26
13
13
thymus
20
14
11
1
1
1
liver
13
10
9
4
7
2
1
1
right lung
22
11
11
1
right kidney
20
10
10
1
1
renal cortex interstitium
20
9
9
1
1
renal pelvis
19
9
9
2
1
retina
6
3
3
23
1
1
1
left kidney
18
9
9
heart left ventricle
11
7
8
3
1
1
2
islet of Langerhans
1
3
6
13
1
1
2
2
2
2
spleen
15
8
6
2
1
1
spinal cord
14
8
7
1
1
adipose tissue
7
8
6
2
4
1
1
sigmoid colon
10
7
5
1
pancreas
5
5
3
5
1
1
1
1
ovary
8
6
4
1
1
pigmented layer of retina
20
psoas muscle
7
8
4
1
thyroid gland
8
5
4
1
1
tibial nerve
6
3
4
3
1
2
transverse colon
8
5
4
1
1
body of pancreas
8
5
4
1
gastrocnemius medialis
8
5
4
1
heart right ventricle
6
5
5
1
1
caudate nucleus
5
3
4
2
1
1
1
muscle of trunk
8
5
4
testis
7
3
3
1
1
1
1
chorionic villus
8
4
4
coronary artery
3
3
3
3
1
2
1
layer of hippocampus
6
3
4
1
1
1
upper lobe of left lung
7
3
3
1
1
1
endocrine pancreas
7
4
4
skeletal muscle tissue
6
3
3
2
1
Peyer's patch
7
3
3
1
prostate gland
4
2
2
1
1
2
2
tibial artery
3
2
3
3
1
2
right atrium auricular region
3
2
2
3
1
2
substantia nigra
5
2
3
2
1
temporal lobe
5
2
5
1
aorta
4
4
4
left renal cortex interstitium
6
2
2
1
1
left renal pelvis
6
2
2
1
1
omental fat pad
5
2
2
2
1
right renal pelvis
6
2
2
1
1
ascending aorta
4
2
3
1
1
breast epithelium
5
3
2
1
esophagus muscularis mucosa
5
2
2
1
1
esophagus squamous epithelium
6
2
2
1
left cardiac atrium
2
1
6
1
1
right renal cortex interstitium
5
2
2
1
1
subcutaneous adipose tissue
2
1
2
5
1
thoracic aorta
4
2
3
1
1
trophoblast
4
3
2
1
1
angular gyrus
4
2
4
cerebellum
3
2
2
1
1
1
chorion membrane
3
3
3
1
colonic mucosa
4
2
3
1
esophagus
4
3
2
1
frontal cortex
2
2
2
2
1
1
lower leg skin
6
2
2
putamen
2
1
1
2
2
1
1
cingulate gyrus
4
2
3
duodenal mucosa
4
2
3
eye
4
2
2
1
mucosa of rectum
4
2
3
parathyroid adenoma
5
2
2
stomach smooth muscle
4
2
3
tongue
4
2
2
1
vagina
4
2
2
1
globus pallidus
2
1
1
2
1
1
limb
3
2
2
1
midbrain
1
1
1
2
1
1
1
muscle layer of colon
4
2
2
muscle layer of duodenum
4
2
2
urinary bladder
3
2
2
1
uterus
3
2
1
1
1
Ammon's horn
2
2
1
2
gastroesophageal sphincter
5
1
1
occipital lobe
1
1
1
2
1
1
right cardiac atrium
2
2
3
superior temporal gyrus
1
1
1
2
1
1
Brodmann (1909) area 46
2
2
2
medulla oblongata
1
1
1
2
1
middle frontal gyrus
2
1
1
1
1
pons
1
1
1
2
1
skin of body
1
1
1
3
subcutaneous abdominal adipose tissue
5
1
umbilical cord
2
1
1
1
1
cartilage tissue
2
1
2
cerebellar cortex
2
1
1
1
germinal matrix
2
1
2
amnion
2
1
1
cortex of kidney
1
1
1
1
embryonic facial prominence
1
1
1
1
femur
2
1
1
inferior parietal cortex
1
1
1
1
mucosa of stomach
2
1
1
rectum smooth muscle tissue
1
1
2
right lobe of liver
2
1
1
arm bone
1
1
1
germinal center
1
1
1
leg bone
1
1
1
prefrontal cortex
1
1
1
suprapubic skin
3
hindlimb muscle
1
1
muscle of leg
2
amygdala
1
1
blood
2
breast carcinoma
1
1
chorion
2
dorsolateral prefrontal cortex
1
1
endometrium cancer
1
1
first pancreatic bud
1
1
forelimb muscle
1
1
hypothalamus
1
1
kidney epithelium
1
1
mammary gland
1
1
middle frontal area 46
2
nucleus accumbens
1
1
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
1
1
placental basal plate
2
respiratory system smooth muscle
1
1
skin of forearm
1
1
skin of prepuce of penis
1
1
tissue
2
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior cingulate cortex
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder (urinary bladder)
1
breast
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebellum (Hemisphere)
1
cerebrospinal fluid
1
circle of Willis
1
claustrum of brain
1
colon
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus mucosa
1
fallopian tube
1
fetal heart
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
mid-frontal lobe
1
minor salivary gland
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
right arm bone
1
septal nuclear complex
1
skeletal muscle
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
synovial joint
1
temporal pole
1
thalamic complex
1
tissue-resident macrophage
1
type B pancreatic cell
1
visceral abdominal adipose tissue
1
white adipose tissue
1
white matter
1
See all biosamples
Download