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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
369
target gene predictions
328
candidate regulatory elements
210
histone modifications
100
binding sites
89
accessible chromatin
72
variant allelic effects
11
caQTL
6
chromatin state
5
eQTL
3
hQTL
2
meQTL
1
other
Date released
330
February, 2021
324
September, 2022
166
May, 2021
111
November, 2021
89
February, 2024
52
June, 2020
35
May, 2020
31
October, 2022
28
January, 2021
9
November, 2022
6
August, 2017
6
May, 2022
4
February, 2023
3
August, 2021
1
January, 2022
1
March, 2020
Available data
1595
bed bed3+
591
tsv
bigWig
bed bed9
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1195
Homo sapiens
Biosample type
2121
cell line
1732
tissue
1196
primary cell
335
in vitro differentiated cells
4
stem cell
Organ
305
epithelium
162
connective tissue
86
vasculature
78
skin of body
61
blood vessel
36
mammary gland
35
penis
34
kidney
32
pancreas
29
extraembryonic component
29
musculature of body
27
liver
23
brain
21
lung
18
artery
18
heart
16
embryo
15
eye
14
vein
12
bronchus
12
intestine
10
bone element
9
blood
9
bodily fluid
9
bone marrow
8
prostate gland
7
esophagus
7
lymphatic vessel
7
placenta
6
stomach
5
adrenal gland
5
trachea
4
uterus
3
large intestine
3
mouth
3
spinal cord
2
gonad
2
small intestine
2
thyroid gland
1
limb
1
ovary
Project
1054
AMP
111
ENCODE
31
T1D
Genome assembly (visualization)
1190
hg19
228
GRCh38
files.file_type!
bed bed9
bigWig
BIOSAMPLE
TYPE
1196 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
histone modifications
binding sites
accessible chromatin
variant allelic effects
caQTL
chromatin state
eQTL
hQTL
meQTL
other
primary cell
monocyte
2
86
1
2
1
1
CD8-positive, alpha-beta T cell
5
7
30
common myeloid progenitor, CD34-positive
14
27
CD14-positive monocyte
19
8
B cell
10
14
CD4-positive, alpha-beta memory T cell
9
14
endothelial cell
7
1
2
2
2
2
1
CD8-positive, alpha-beta memory T cell
7
8
foreskin fibroblast
2
6
2
4
1
foreskin keratinocyte
4
11
endothelial cell of umbilical vein
4
6
2
1
1
mononuclear cell
6
7
1
trophoblast cell
5
7
1
1
fibroblast
4
1
2
6
fibroblast of lung
4
6
2
1
keratinocyte
5
3
2
1
1
1
mammary epithelial cell
1
3
3
4
1
1
regulatory T cell
4
5
1
1
2
hepatocyte
3
1
4
1
1
2
natural killer cell
5
6
1
smooth muscle cell
6
2
2
1
1
CD4-positive, alpha-beta T cell
3
8
T cell
4
4
1
2
osteoblast
2
2
2
3
2
pericyte cell
10
1
skeletal muscle myoblast
2
4
1
2
1
1
T-helper 1 cell
3
6
1
bronchial epithelial cell
2
4
1
2
1
endothelial cell of hepatic sinusoid
6
4
neurosphere
3
7
fibroblast of dermis
4
4
1
mammary gland epithelial cell
4
3
1
1
neutrophil
3
4
1
1
T-helper 17 cell
3
5
T-helper 2 cell
3
5
dermis blood vessel endothelial cell
2
6
macrophage
3
1
3
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
4
1
1
pancreatic ductal cell
3
2
1
1
1
astrocyte
4
2
1
epithelial cell of prostate
3
4
fibroblast of cardiac tissue
4
3
fibroblast of mammary gland
1
2
1
2
1
fibroblast of pulmonary artery
1
2
1
2
1
fibroblast of villous mesenchyme
1
2
1
2
1
retinal pigment epithelial cell
1
2
1
2
1
CD1c-positive myeloid dendritic cell
1
2
1
1
1
T-cell
2
4
cardiac muscle cell
1
2
1
2
fibroblast of breast
2
4
glutamatergic neuron
2
4
kidney tubule cell
2
3
1
myoepithelial cell of mammary gland
2
4
naive T cell
3
3
olfactory receptor cell
6
peripheral blood mononuclear cell
4
1
1
pulmonary artery endothelial cell
1
2
1
1
1
skin fibroblast
3
2
1
CD4-positive helper T cell
2
1
2
choroid plexus epithelial cell
1
2
1
1
epithelial cell of esophagus
1
2
2
epithelial cell of proximal tubule
1
2
1
1
foreskin melanocyte
1
4
renal cortical epithelial cell
1
2
1
1
skeletal muscle satellite cell
2
2
1
tracheal epithelial cell
2
2
1
acute myeloid leukemia cell
2
2
aortic adventitial fibroblast
1
2
1
astrocyte of the cerebellum
1
2
1
astrocyte of the hippocampus
1
2
1
cardiac fibroblast
3
1
dermis lymphatic vessel endothelial cell
2
2
erythroblast
2
2
fibroblast of peridontal ligament
1
2
1
fibroblast of the aortic adventitia
1
2
1
glomerular endothelial cell
1
2
1
glomerular visceral epithelial cell
1
2
1
hepatic stellate cell
1
1
1
1
iris pigment epithelial cell
1
2
1
kidney epithelial cell
1
2
1
kidney glomerular epithelial cell
1
2
1
luminal epithelial cell of mammary gland
3
1
lung microvascular endothelial cell
1
3
mast cell
1
1
1
1
mesenchymal stem cell
1
1
1
1
myofibroblast cell
1
3
non-pigmented ciliary epithelial cell
1
2
1
pancreatic acinar cell
3
1
pancreatic delta cell
3
1
preadipocyte
2
1
1
renal epithelial cell
1
2
1
skeletal muscle cell
1
2
1
skeletal muscle fiber
2
2
smooth muscle cell of the brain vasculature
1
2
1
type I muscle cell
1
1
1
1
type II muscle cell
1
1
1
1
Ishikawa
1
1
1
Th1 cell
1
1
1
Th17 cell
1
1
1
astrocyte of the spinal cord
1
2
basal cell
1
2
bone marrow cell
1
2
brain microvascular endothelial cell
1
2
colon epithelial cell
3
cortical cell of adrenal gland
2
1
enterocyte
3
erythroid cell
1
1
1
fibroblast of gingiva
1
2
fibroblast of the conjunctiva
1
2
gabaergic neuron
2
1
mononuclear cell of bone marrow
1
2
myotube
1
2
neoplastic cell
1
1
1
pancreatic A cell
3
pancreatic alpha cell
2
1
pancreatic beta cell
2
1
peripheral blood stem cell
1
1
1
plasma cell
1
1
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
stromal cell of bone marrow
1
2
type B pancreatic cell
3
type II pneumocyte
2
1
cardiac fibroblast
2
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
Th2 cell
1
1
activated CD4-positive, alpha-beta T cell
2
adipocyte
1
1
amnion mesenchymal stem cell
1
1
amniotic stem cell
1
1
aortic endothelial cell
1
1
blood vessel smooth muscle cell
2
brain pericyte
1
1
cardiac muscle myoblast
1
1
chronic lymphocytic leukemia cell
1
1
columnar chondrocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
enteric smooth muscle cell
2
epidermal melanocyte
1
1
epithelial cell of amnion
1
1
erythroid progenitor cell
1
1
goblet cell
2
head and neck squamous cell carcinoma
1
1
kidney capillary endothelial cell
1
1
leukemic stem cell
1
1
mammary stem cell
1
1
mantle cell lymphoma cell
2
mature neutrophil
1
1
megakaryocyte
2
memory B cell
2
meso-epithelial cell
1
1
mesothelial cell
1
1
naive B cell
2
naive t cell
1
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
neuronal stem cell
1
1
oligodendrocyte
1
1
pancreatic endocrine cell
1
1
parietal cell
1
1
peptic cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular cardiac myocyte
1
1
renal proximal tubule cell
1
1
small cell ovarian carcinoma cell
1
1
smooth muscle cell of the coronary artery
1
1
smooth muscle cell of the esophagus
2
somatic muscle myotube
1
1
thyroid follicular cell
1
1
vascular associated smooth muscle cell
2
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD8-positive, alpha-beta T cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar cell type II
1
alveolar macrophage
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
basal cell of epidermis
1
bone cell
1
bronchial goblet cell
1
cardiac endothelial cell
1
cell
1
ciliated cell
1
club cell
1
colon goblet cell
1
colorectal cancer
1
conventional dendritic cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
eccrine cell
1
effector memory CD4-positive, alpha-beta T cell
1
endocardial cell
1
endothelial cell of coronary artery
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
fat cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
foveolar cell of stomach
1
glial cell
1
granular cell of epidermis
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
induced T-regulatory cell
1
inflammatory macrophage
1
intestinal epithelial cell
1
intestinal tuft cell
1
leukocyte
1
luminal epithelial cell of prostatic duct
1
luteal cell
1
lymphocyte of B lineage
1
mature NK T cell
1
megakaryocyte-erythroid progenitor cell
1
melanocyte
1
meningioma cell
1
microglial cell
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
myoepithelial cell
1
naive regulatory T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neural progenitor cell
1
neuron
1
neutrophil progenitor cell
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
non-neuronal cell
1
oligodendrocyte precursor cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
paneth cell
1
peripheral blood
1
plasmacytoid dendritic cell
1
regular atrial cardiac myocyte
1
respiratory goblet cell
1
schwann cell
1
seminoma cell
1
skeletal muscle fibroblast
1
small intestine goblet cell
1
somatic gonadal cell
1
sperm
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
type I cell of adrenal cortex
1
type I pneumocyte
1
type II cell of adrenal cortex
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
1
See all biosamples
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