Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
target gene predictions
976
histone modifications
903
accessible chromatin
817
binding sites
640
gene expression
158
differential activity
124
variant allelic effects
72
Fine-mapped variants
40
chromatin state
35
eQTL
13
caQTL
4
variant to gene
3
hQTL
2
meQTL
2
other
2
pQTL
1
representative DNase hypersensitivity sites
1
sQTL
Date released
2585
February, 2021
844
September, 2022
288
June, 2020
281
September, 2023
234
May, 2021
222
November, 2021
186
February, 2024
117
May, 2020
101
August, 2021
101
October, 2022
82
January, 2020
80
March, 2020
57
March, 2023
47
February, 2020
41
November, 2022
34
August, 2017
32
February, 2023
30
March, 2024
28
January, 2021
19
April, 2020
15
May, 2022
13
November, 2019
9
October, 2019
4
January, 2022
3
November, 2020
3
September, 2018
2
January, 2018
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
4566
bed bed3+
898
tsv
869
bed bed9
543
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
13
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
5417
Homo sapiens
Biosample type
1812
primary cell
1748
cell line
1544
tissue
357
in vitro differentiated cells
1
stem cell
Organ
749
epithelium
485
kidney
315
connective tissue
300
brain
215
musculature of body
196
vasculature
191
pancreas
162
lung
158
intestine
153
heart
145
blood vessel
143
limb
134
bodily fluid
127
blood
123
skin of body
108
liver
104
embryo
95
large intestine
91
eye
76
extraembryonic component
65
stomach
58
adipose tissue
58
bone element
54
artery
54
mammary gland
49
prostate gland
45
lymph node
43
penis
41
small intestine
39
placenta
38
ureter
37
adrenal gland
28
gonad
25
esophagus
25
spinal cord
24
thymus
20
uterus
19
spleen
17
nerve
16
lymphatic vessel
16
testis
14
vein
13
lymphoid tissue
12
skeleton
12
thyroid gland
11
bronchus
11
ovary
10
mouth
8
bone marrow
7
breast
6
tongue
5
trachea
5
urinary bladder
5
vagina
2
nose
2
pituitary gland
Project
4909
AMP
281
KPMP
222
ENCODE
32
T1D
19
LungMap
1
ITG
Genome assembly (visualization)
4654
hg19
621
GRCh38
1
hg18
annotation_type!
target gene predictions
BIOSAMPLE
TYPE
5464 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
histone modifications
accessible chromatin
binding sites
gene expression
differential activity
variant allelic effects
Fine-mapped variants
chromatin state
eQTL
caQTL
variant to gene
hQTL
meQTL
other
pQTL
representative DNase hypersensitivity sites
sQTL
primary cell
monocyte
86
18
1
15
1
1
CD8-positive, alpha-beta T cell
7
30
4
3
endothelial cell
1
15
2
8
2
1
2
common myeloid progenitor, CD34-positive
27
hepatocyte
1
4
8
1
9
2
+ See 425 more…
cell line
A549
21
1
1
2
EndoC_BH1
1
8
1
8
1
1
breast cancer cell
11
9
MCF-7
9
2
1
3
H1-hESC
1
1
1
2
8
+ See 754 more…
tissue
kidney
29
2
10
1
7
1
1
heart
37
1
5
1
3
2
stomach
40
1
3
1
brain
29
3
2
1
1
1
muscle of arm
33
1
1
+ See 246 more…
in vitro differentiated cells
neural progenitor cell
5
14
10
7
hematopoietic multipotent progenitor cell
19
1
1
1
1
adipocyte
4
1
4
1
1
4
cardiomyocytes
11
extended pluripotent stem (EPS) cells
9
+ See 110 more…
stem cell
H1-hESC
1
See all biosamples
Download