Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1218
target gene predictions
976
histone modifications
817
binding sites
accessible chromatin
123
variant allelic effects
40
chromatin state
11
caQTL
10
eQTL
3
hQTL
2
meQTL
2
other
2
variant to gene
1
pQTL
1
sQTL
Date released
2398
February, 2021
1672
September, 2022
259
May, 2021
250
February, 2024
99
October, 2022
81
May, 2020
45
March, 2020
34
August, 2017
21
August, 2021
5
February, 2023
5
September, 2023
1
April, 2019
1
August, 2020
1
August, 2022
1
January, 2020
1
January, 2022
1
May, 2022
1
November, 2019
Available data
4877
bed bed3+
869
bed bed9
617
tsv
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
18
bigWig
7
bigBed narrowPeak
1
bam
Organism
4877
Homo sapiens
Biosample type
1962
cell line
1652
tissue
973
primary cell
285
in vitro differentiated cells
4
stem cell
Organ
279
epithelium
267
brain
260
kidney
251
musculature of body
222
connective tissue
221
lung
199
intestine
178
bodily fluid
169
blood
166
embryo
155
limb
147
skin of body
143
heart
126
vasculature
124
large intestine
103
extraembryonic component
97
blood vessel
81
stomach
79
pancreas
76
liver
72
uterus
63
mammary gland
59
small intestine
58
prostate gland
54
bone element
52
placenta
51
penis
47
ureter
46
adrenal gland
46
lymph node
42
adipose tissue
39
eye
36
thymus
35
artery
31
gonad
27
esophagus
27
spinal cord
24
spleen
17
testis
16
lymphoid tissue
15
vein
14
ovary
14
thyroid gland
12
mouth
11
nerve
11
pituitary gland
10
bronchus
9
lymphatic vessel
8
bone marrow
8
breast
7
skeleton
6
tongue
6
urinary bladder
6
vagina
4
trachea
2
nose
Project
4877
AMP
111
ENCODE
31
T1D
1
ITG
Genome assembly (visualization)
4871
hg19
295
GRCh38
1
hg18
annotation_type!
accessible chromatin
BIOSAMPLE
TYPE
4877 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
variant allelic effects
chromatin state
caQTL
eQTL
hQTL
meQTL
other
variant to gene
pQTL
sQTL
cell line
HeLa-S3
5
55
1
A549
21
19
1
2
H1-hESC
1
39
1
2
K562
7
23
1
2
1
MCF-7
9
6
2
3
+ See 743 more…
tissue
stomach
40
21
1
heart
37
20
1
1
2
brain
29
16
3
1
1
lung
33
17
muscle of arm
33
16
1
+ See 194 more…
primary cell
monocyte
1
86
1
1
1
common myeloid progenitor, CD34-positive
27
14
CD8-positive, alpha-beta T cell
7
3
30
CD14-positive monocyte
8
19
B cell
14
10
+ See 212 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
10
1
1
neural progenitor cell
5
5
14
adipocyte
4
6
1
1
4
T-cell acute lymphoblastic leukemia
5
3
mesenchymal stem cell
3
3
1
1
+ See 91 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download