Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1604
candidate regulatory elements
1183
target gene predictions
975
histone modifications
815
binding sites
628
accessible chromatin
121
variant allelic effects
39
chromatin state
11
caQTL
10
eQTL
3
hQTL
2
meQTL
2
other
2
variant to gene
1
pQTL
1
sQTL
Date released
2371
February, 2021
1616
September, 2022
290
February, 2024
283
June, 2020
282
May, 2021
135
May, 2020
98
October, 2022
66
January, 2020
51
August, 2021
44
March, 2020
41
November, 2022
33
August, 2017
30
February, 2023
15
May, 2022
13
November, 2019
9
October, 2019
5
January, 2022
5
September, 2023
3
September, 2018
2
November, 2020
1
April, 2019
1
August, 2020
1
August, 2022
1
June, 2021
Available data
5397
bed bed3+
838
bed bed9
610
tsv
277
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
5352
Homo sapiens
Biosample type
2122
cell line
1744
tissue
1179
primary cell
347
in vitro differentiated cells
4
stem cell
Organ
393
epithelium
309
brain
306
kidney
274
connective tissue
270
musculature of body
227
lung
209
intestine
190
bodily fluid
181
blood
176
embryo
175
limb
163
heart
155
skin of body
154
vasculature
131
large intestine
121
pancreas
118
blood vessel
109
extraembryonic component
96
liver
94
eye
stomach
74
uterus
67
bone element
67
mammary gland
63
prostate gland
60
small intestine
54
lymph node
54
penis
54
placenta
51
ureter
49
adipose tissue
47
adrenal gland
46
artery
37
thymus
35
gonad
29
esophagus
spinal cord
26
spleen
19
testis
18
lymphoid tissue
17
vein
15
ovary
15
skeleton
15
thyroid gland
14
nerve
13
mouth
11
bronchus
11
pituitary gland
10
lymphatic vessel
9
breast
8
bone marrow
7
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
Project
5397
AMP
324
ENCODE
60
T1D
19
LungMap
1
ITG
Genome assembly (visualization)
5391
hg19
464
GRCh38
1
hg18
organ_slims!
spinal cord
stomach
BIOSAMPLE
TYPE
5397 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
accessible chromatin
variant allelic effects
chromatin state
caQTL
eQTL
hQTL
meQTL
other
variant to gene
pQTL
sQTL
cell line
HeLa-S3
5
55
1
A549
21
19
1
2
1
H1-hESC
1
39
1
2
1
K562
7
23
1
2
1
1
MCF-7
9
6
2
3
1
+ See 760 more…
tissue
heart
37
20
1
1
5
2
kidney
29
14
2
1
10
1
1
brain
29
16
3
1
2
1
muscle of arm
33
16
1
1
lung
33
17
+ See 211 more…
primary cell
monocyte
1
86
1
17
1
1
CD8-positive, alpha-beta T cell
7
3
30
2
common myeloid progenitor, CD34-positive
27
14
CD14-positive monocyte
8
19
B cell
14
10
2
+ See 251 more…
in vitro differentiated cells
neural progenitor cell
5
5
14
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
1
4
4
mesenchymal stem cell
3
3
1
1
1
T-cell acute lymphoblastic leukemia
5
3
+ See 103 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download