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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
328
candidate regulatory elements
233
target gene predictions
211
accessible chromatin
210
histone modifications
100
binding sites
76
variant allelic effects
9
caQTL
6
chromatin state
5
eQTL
3
hQTL
2
meQTL
1
other
Date released
334
February, 2021
327
September, 2022
179
May, 2021
102
February, 2024
81
May, 2020
52
June, 2020
29
October, 2022
21
January, 2020
16
August, 2021
13
May, 2022
9
November, 2022
6
August, 2017
5
October, 2019
4
February, 2023
2
January, 2022
2
November, 2020
1
June, 2021
1
March, 2020
Available data
1184
bed bed3+
308
tsv
164
bed bed9
141
bigWig
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1139
Homo sapiens
Biosample type
2125
cell line
1849
tissue
1184
primary cell
347
in vitro differentiated cells
4
stem cell
Organ
291
epithelium
153
connective tissue
95
vasculature
73
skin of body
66
blood vessel
49
kidney
35
penis
33
liver
33
mammary gland
32
pancreas
31
brain
30
musculature of body
29
extraembryonic component
20
artery
18
lung
16
embryo
16
eye
15
vein
14
heart
11
bronchus
9
blood
9
bodily fluid
9
bone element
8
bone marrow
8
prostate gland
7
placenta
6
lymphatic vessel
5
esophagus
5
trachea
4
intestine
3
mouth
3
spinal cord
3
uterus
2
stomach
1
adrenal gland
1
gonad
1
limb
1
thyroid gland
Project
1184
AMP
333
ENCODE
59
T1D
19
LungMap
Genome assembly (visualization)
1180
hg19
163
GRCh38
BIOSAMPLE
TYPE
1184 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
histone modifications
binding sites
variant allelic effects
caQTL
chromatin state
eQTL
hQTL
meQTL
other
primary cell
monocyte
1
17
86
1
1
1
CD8-positive, alpha-beta T cell
7
3
2
30
common myeloid progenitor, CD34-positive
27
14
CD14-positive monocyte
8
19
B cell
14
10
2
CD4-positive, alpha-beta memory T cell
14
9
hepatocyte
1
2
7
4
1
2
CD8-positive, alpha-beta memory T cell
8
7
endothelial cell of umbilical vein
6
4
2
2
1
foreskin fibroblast
6
2
1
2
4
foreskin keratinocyte
11
4
mononuclear cell
7
6
1
osteoblast
2
2
5
2
3
regulatory T cell
5
3
4
1
1
trophoblast cell
7
5
1
1
fibroblast of lung
6
4
2
1
mammary epithelial cell
3
1
1
3
4
1
T-helper 1 cell
6
3
3
endothelial cell
4
1
2
2
2
1
natural killer cell
6
4
1
1
skeletal muscle myoblast
4
2
2
1
2
1
T cell
4
4
1
2
keratinocyte
3
3
2
1
1
1
CD4-positive, alpha-beta T cell
8
2
T-helper 17 cell
5
3
2
T-helper 2 cell
5
3
2
bronchial epithelial cell
4
2
1
1
2
endothelial cell of hepatic sinusoid
4
6
neurosphere
7
3
fibroblast
2
1
6
fibroblast of dermis
4
4
1
neutrophil
4
3
1
1
dermis blood vessel endothelial cell
6
2
mammary gland epithelial cell
3
3
1
1
retinal pigment epithelial cell
2
1
2
1
2
cardiac muscle cell
2
1
1
1
2
epithelial cell of prostate
4
3
fibroblast of mammary gland
2
1
1
1
2
fibroblast of pulmonary artery
2
1
1
1
2
fibroblast of villous mesenchyme
2
1
1
1
2
kidney tubule cell
3
2
2
naive thymus-derived CD4-positive, alpha-beta T cell
4
1
1
1
pancreatic ductal cell
1
2
2
1
1
smooth muscle cell
3
2
1
1
CD1c-positive myeloid dendritic cell
2
1
1
1
1
T-cell
4
2
astrocyte
2
2
1
1
choroid plexus epithelial cell
2
1
1
1
1
epithelial cell of proximal tubule
2
1
1
1
1
fibroblast of breast
4
2
fibroblast of cardiac tissue
3
3
macrophage
1
1
3
1
myoepithelial cell of mammary gland
4
2
naive T cell
3
3
olfactory receptor cell
6
pancreatic beta cell
1
4
1
peripheral blood mononuclear cell
4
1
1
pulmonary artery endothelial cell
2
1
1
1
1
renal cortical epithelial cell
2
1
2
1
cardiac fibroblast
3
2
astrocyte of the cerebellum
2
1
1
1
astrocyte of the hippocampus
2
1
1
1
epithelial cell of esophagus
2
1
2
foreskin melanocyte
4
1
glomerular endothelial cell
2
1
1
1
glomerular visceral epithelial cell
2
1
2
hepatic stellate cell
1
1
2
1
kidney epithelial cell
2
1
1
1
kidney glomerular epithelial cell
2
1
2
mesenchymal stem cell
1
2
1
1
pancreatic alpha cell
1
3
1
skeletal muscle cell
2
1
1
1
skeletal muscle satellite cell
2
1
2
skin fibroblast
2
2
1
smooth muscle cell of the brain vasculature
2
1
1
1
tracheal epithelial cell
1
2
2
acute myeloid leukemia cell
2
2
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
brain microvascular endothelial cell
2
1
1
cardiac fibroblast
3
1
dermis lymphatic vessel endothelial cell
2
2
erythroblast
2
2
fibroblast of peridontal ligament
2
1
1
fibroblast of the aortic adventitia
2
1
1
glutamatergic neuron
4
iris pigment epithelial cell
2
1
1
lung microvascular endothelial cell
3
1
myofibroblast cell
1
3
non-pigmented ciliary epithelial cell
2
1
1
pancreatic delta cell
1
2
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
skeletal muscle fiber
2
2
type I muscle cell
2
1
1
type II muscle cell
2
1
1
Ishikawa
1
1
1
Th1 cell
1
1
1
Th17 cell
1
1
1
astrocyte of the spinal cord
2
1
bone marrow cell
2
1
brain pericyte
1
1
1
enterocyte
3
erythroid cell
1
1
1
fibroblast of gingiva
2
1
fibroblast of the conjunctiva
2
1
kidney capillary endothelial cell
1
1
1
mast cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cell
1
2
naive thymus-derived CD8-positive, alpha-beta T cell
1
2
neoplastic cell
1
1
1
pancreatic acinar cell
1
1
1
peripheral blood stem cell
1
1
1
plasma cell
1
1
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
stromal cell of bone marrow
2
1
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive helper T cell
2
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
T follicular helper cell
2
Th2 cell
1
1
adipocyte
1
1
amnion mesenchymal stem cell
1
1
amniotic stem cell
1
1
basal cell
2
cardiac muscle myoblast
1
1
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
1
1
columnar chondrocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
epidermal melanocyte
1
1
epithelial cell of amnion
1
1
erythroid progenitor cell
1
1
gamma-delta T cell
2
goblet cell
2
head and neck squamous cell carcinoma
1
1
leukemic stem cell
1
1
leukocyte
2
luminal epithelial cell of mammary gland
1
1
mammary stem cell
1
1
mantle cell lymphoma cell
2
mature natural killer cell
2
mature neutrophil
1
1
memory B cell
2
memory T cell
2
memory regulatory T cell
2
meso-epithelial cell
1
1
naive regulatory T cell
2
neuronal stem cell
1
1
pancreatic endocrine cell
1
1
pancreatic polypeptide-secreting cell
1
1
pericyte cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular cardiac myocyte
1
1
renal proximal tubule cell
1
1
small cell ovarian carcinoma cell
1
1
smooth muscle cell of the coronary artery
1
1
somatic muscle myotube
1
1
vascular associated smooth muscle cell
2
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD4-positive, alpha-beta T cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cell
1
colorectal cancer
1
cortical cell of adrenal gland
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of coronary artery
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gabaergic neuron
1
glial cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
immature natural killer cell
1
induced T-regulatory cell
1
inflammatory macrophage
1
intestinal epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
megakaryocyte
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesothelial cell
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
naive t cell
1
neural cell
1
neural progenitor cell
1
neuron
1
neutrophil progenitor cell
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic A cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic stellate cell
1
parietal cell
1
peptic cell
1
peripheral blood
1
plasmacytoid dendritic cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
seminoma cell
1
somatic gonadal cell
1
sperm
1
thyroid follicular cell
1
type B pancreatic cell
1
type II pneumocyte
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
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