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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1265
candidate regulatory elements
890
target gene predictions
678
accessible chromatin
299
histone modifications
136
binding sites
113
variant allelic effects
30
chromatin state
13
caQTL
10
eQTL
3
hQTL
2
meQTL
2
pQTL
2
variant to gene
1
other
1
sQTL
Date released
1245
September, 2022
944
February, 2021
333
November, 2021
208
May, 2021
126
May, 2020
124
February, 2024
115
June, 2020
62
January, 2020
56
January, 2021
31
March, 2020
31
October, 2022
30
February, 2023
28
August, 2021
26
November, 2022
24
August, 2017
19
April, 2020
15
May, 2022
9
November, 2019
7
October, 2019
3
September, 2018
2
January, 2022
2
November, 2020
1
April, 2019
1
August, 2020
1
August, 2022
1
June, 2021
Available data
3445
bed bed3+
801
tsv
650
bed bed9
530
bigWig
108
txt
35
bigBed bed9
27
bed bed9+
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
3400
Homo sapiens
Biosample type
2125
cell line
1850
tissue
1595
primary cell
347
in vitro differentiated cells
4
stem cell
Organ
499
epithelium
277
kidney
265
musculature of body
257
connective tissue
239
brain
198
intestine
169
limb
166
lung
165
heart
151
vasculature
139
pancreas
118
blood vessel
107
large intestine
106
extraembryonic component
100
skin of body
93
stomach
83
eye
73
liver
64
small intestine
57
adrenal gland
54
placenta
51
ureter
46
embryo
45
adipose tissue
43
artery
41
mammary gland
38
thymus
37
penis
33
esophagus
31
gonad
27
bone element
26
spinal cord
26
spleen
19
prostate gland
17
ovary
17
thyroid gland
15
skeleton
15
vein
14
bronchus
14
nerve
14
uterus
13
lymphoid tissue
13
testis
11
bone marrow
10
bodily fluid
10
lymphatic vessel
10
mouth
9
blood
9
breast
7
tongue
7
urinary bladder
6
vagina
5
trachea
1
pituitary gland
Project
3033
AMP
333
ENCODE
59
T1D
19
LungMap
1
ITG
Genome assembly (visualization)
3438
hg19
594
GRCh38
BIOSAMPLE
TYPE
3445 results
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table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
histone modifications
binding sites
variant allelic effects
chromatin state
caQTL
eQTL
hQTL
meQTL
pQTL
variant to gene
other
sQTL
tissue
heart
37
20
5
1
1
2
stomach
40
21
3
1
kidney
29
14
10
2
1
1
1
brain
29
16
2
3
1
1
muscle of arm
33
16
1
1
lung
33
17
small intestine
29
17
1
adrenal gland
28
17
1
placenta
26
15
1
2
1
large intestine
27
14
1
1
muscle of leg
27
14
2
muscle of back
28
13
left lung
26
13
thymus
20
14
1
1
1
retina
6
3
23
1
1
1
right lung
22
11
1
liver
13
10
4
2
1
1
1
renal cortex interstitium
20
9
1
1
renal pelvis
19
9
2
1
right kidney
20
10
1
left kidney
18
9
spleen
15
8
2
1
heart left ventricle
11
7
3
1
2
spinal cord
14
8
1
adipose tissue
7
8
2
1
1
1
pigmented layer of retina
20
pancreas
5
5
5
1
1
1
1
sigmoid colon
10
7
1
islet of Langerhans
1
6
1
2
1
3
1
1
psoas muscle
7
8
1
ovary
8
6
1
body of pancreas
8
5
1
gastrocnemius medialis
8
5
1
thyroid gland
8
5
1
tibial nerve
6
3
3
2
transverse colon
8
5
1
heart right ventricle
6
5
1
1
muscle of trunk
8
5
testis
7
3
1
1
1
upper lobe of left lung
7
3
1
1
1
caudate nucleus
5
3
2
1
1
chorionic villus
8
4
coronary artery
3
3
3
2
1
layer of hippocampus
6
3
1
1
1
Peyer's patch
7
3
1
endocrine pancreas
7
4
prostate gland
4
2
1
2
2
left cardiac atrium
2
1
1
1
5
left renal pelvis
6
2
1
1
right atrium auricular region
3
2
3
2
right renal pelvis
6
2
1
1
skeletal muscle tissue
6
3
1
tibial artery
3
2
3
2
breast epithelium
5
3
1
esophagus squamous epithelium
6
2
1
left renal cortex interstitium
6
2
1
omental fat pad
5
2
2
substantia nigra
5
2
1
1
temporal lobe
5
2
1
1
trophoblast
4
3
1
1
aorta
4
4
ascending aorta
4
2
1
1
colonic mucosa
4
2
1
1
esophagus muscularis mucosa
5
2
1
lower leg skin
6
2
right renal cortex interstitium
5
2
1
thoracic aorta
4
2
1
1
cerebellum
3
2
1
1
chorion membrane
3
3
1
cingulate gyrus
4
2
1
duodenal mucosa
4
2
1
esophagus
4
3
eye
4
2
1
frontal cortex
2
2
2
1
mucosa of rectum
4
2
1
parathyroid adenoma
5
2
stomach smooth muscle
4
2
1
subcutaneous adipose tissue
2
2
1
1
1
tongue
4
2
1
Ammon's horn
2
2
2
angular gyrus
4
2
gastroesophageal sphincter
5
1
globus pallidus
2
1
2
1
limb
3
2
1
midbrain
1
1
2
1
1
muscle layer of colon
4
2
muscle layer of duodenum
4
2
occipital lobe
1
1
2
1
1
putamen
2
1
2
1
subcutaneous abdominal adipose tissue
5
1
urinary bladder
3
2
1
uterus
3
2
1
vagina
4
2
superior temporal gyrus
1
1
2
1
umbilical cord
2
1
1
1
Brodmann (1909) area 46
2
2
cerebellar cortex
2
1
1
medulla oblongata
1
1
2
middle frontal gyrus
2
1
1
pons
1
1
2
right cardiac atrium
2
2
amnion
2
1
cortex of kidney
1
1
1
embryonic facial prominence
1
1
1
femur
2
1
germinal matrix
2
1
inferior parietal cortex
1
1
1
mucosa of stomach
2
1
prefrontal cortex
1
1
1
rectum smooth muscle tissue
1
1
1
right lobe of liver
2
1
suprapubic skin
3
hindlimb muscle
1
1
muscle of leg
2
arm bone
1
1
breast carcinoma
1
1
cartilage tissue
1
1
chorion
2
endometrium cancer
1
1
first pancreatic bud
1
1
forelimb muscle
1
1
germinal center
1
1
kidney epithelium
1
1
leg bone
1
1
mammary gland
1
1
middle frontal area 46
2
pancreatic ductal cell
2
pancreatic stellate cell
2
placental basal plate
2
respiratory system smooth muscle
1
1
skin of body
1
1
skin of forearm
1
1
skin of prepuce of penis
1
1
tissue
2
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Schwann cell
1
amygdala
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder (urinary bladder)
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellum (Hemisphere)
1
cerebrospinal fluid
1
circle of Willis
1
claustrum of brain
1
colon
1
corneal epithelium
1
crypt of Lieberkuhn
1
dentate nucleus
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dorsolateral prefrontal cortex
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
fallopian tube
1
fetal heart
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
hypothalamus
1
intestinal epithelium
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
mid-frontal lobe
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus accumbens
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary gland
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal connecting tubule
1
renal cortex tubule
1
right arm bone
1
septal nuclear complex
1
skeletal muscle
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
temporal pole
1
thalamic complex
1
tissue-resident macrophage
1
type B pancreatic cell
1
white adipose tissue
1
white matter
1
primary cell
monocyte
2
18
86
1
1
1
CD8-positive, alpha-beta T cell
7
5
4
30
common myeloid progenitor, CD34-positive
27
14
B cell
14
10
6
endothelial cell
7
15
1
2
2
2
1
CD14-positive monocyte
8
19
fibroblast
4
16
1
6
CD4-positive, alpha-beta memory T cell
14
9
pericyte cell
1
10
10
hepatocyte
1
3
8
4
1
2
macrophage
3
12
3
1
smooth muscle cell
6
9
2
1
1
T cell
4
4
6
2
regulatory T cell
5
4
5
1
1
CD8-positive, alpha-beta memory T cell
8
7
astrocyte
2
4
8
1
endothelial cell of umbilical vein
6
4
2
2
1
foreskin fibroblast
6
2
1
2
4
foreskin keratinocyte
11
4
keratinocyte
3
5
2
2
1
1
1
natural killer cell
6
5
3
1
mononuclear cell
7
6
1
osteoblast
2
2
5
2
3
trophoblast cell
7
5
1
1
fibroblast of lung
6
4
2
1
mammary epithelial cell
3
1
1
3
4
1
CD4-positive, alpha-beta T cell
8
3
1
T-helper 1 cell
6
3
3
endothelial cell of hepatic sinusoid
6
6
excitatory neuron
12
pancreatic beta cell
3
8
1
pancreatic ductal cell
3
5
2
1
1
skeletal muscle myoblast
4
2
2
1
2
1
pancreatic alpha cell
3
7
1
T-helper 17 cell
5
3
2
T-helper 2 cell
5
3
2
bronchial epithelial cell
4
2
1
1
2
mammary gland epithelial cell
3
4
1
1
1
neurosphere
7
3
pancreatic delta cell
4
5
1
erythroblast
2
5
2
fibroblast of cardiac tissue
3
4
2
fibroblast of dermis
4
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
4
2
1
1
1
neutrophil
4
3
1
1
pancreatic acinar cell
3
5
1
retinal pigment epithelial cell
2
1
3
1
2
skeletal muscle satellite cell
2
2
5
dermis blood vessel endothelial cell
6
2
glutamatergic neuron
2
6
cardiac muscle cell
2
1
1
1
2
epithelial cell of prostate
4
3
fibroblast of mammary gland
2
1
1
1
2
fibroblast of pulmonary artery
2
1
1
1
2
fibroblast of villous mesenchyme
2
1
1
1
2
kidney tubule cell
3
2
2
skeletal muscle fiber
5
2
skin fibroblast
2
3
2
type II pneumocyte
2
4
1
CD1c-positive myeloid dendritic cell
2
1
1
1
1
T-cell
4
2
choroid plexus epithelial cell
2
1
1
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
2
3
1
enterocyte
3
3
epithelial cell of proximal tubule
2
1
1
1
1
fibroblast of breast
4
2
hepatic stellate cell
1
1
3
1
luminal epithelial cell of mammary gland
1
3
2
memory B cell
2
4
myoepithelial cell of mammary gland
4
2
naive T cell
3
3
olfactory receptor cell
6
peripheral blood mononuclear cell
4
1
1
pulmonary artery endothelial cell
2
1
1
1
1
renal cortical epithelial cell
2
1
2
1
type I muscle cell
1
3
1
1
type II muscle cell
1
3
1
1
cardiac fibroblast
3
2
CD4-positive helper T cell
2
1
2
astrocyte of the cerebellum
2
1
1
1
astrocyte of the hippocampus
2
1
1
1
basal cell
1
2
2
epithelial cell of esophagus
2
1
2
foreskin melanocyte
4
1
gabaergic neuron
2
3
glomerular endothelial cell
2
1
1
1
glomerular visceral epithelial cell
2
1
2
inhibitory neuron
5
kidney epithelial cell
2
1
1
1
kidney glomerular epithelial cell
2
1
2
mast cell
1
1
1
1
1
mesenchymal stem cell
1
2
1
1
myofibroblast cell
1
1
3
naive B cell
2
3
naive thymus-derived CD8-positive, alpha-beta T cell
2
3
plasma cell
1
2
1
1
skeletal muscle cell
2
1
1
1
smooth muscle cell of the brain vasculature
2
1
1
1
tracheal epithelial cell
1
2
2
acute myeloid leukemia cell
2
2
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
blood vessel smooth muscle cell
2
2
brain microvascular endothelial cell
2
1
1
cardiac fibroblast
3
1
dermis lymphatic vessel endothelial cell
2
2
endothelial cell of lymphatic vessel
1
3
enteric smooth muscle cell
2
2
fibroblast of peridontal ligament
2
1
1
fibroblast of the aortic adventitia
2
1
1
iris pigment epithelial cell
2
1
1
lung microvascular endothelial cell
3
1
megakaryocyte
2
2
mesothelial cell
1
2
1
non-pigmented ciliary epithelial cell
2
1
1
pancreatic polypeptide-secreting cell
1
2
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
smooth muscle cell of the esophagus
2
2
type I pneumocyte
1
3
Ishikawa
1
1
1
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD4-positive, alpha-beta T cell
2
1
adipocyte
2
1
astrocyte of the spinal cord
2
1
bone marrow cell
2
1
brain pericyte
1
1
1
ciliated cell
1
2
club cell
1
2
endocardial cell
1
2
enteric neuron
1
2
erythroid cell
1
1
1
fibroblast of gingiva
2
1
fibroblast of the conjunctiva
2
1
goblet cell
1
2
kidney capillary endothelial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
1
2
oligodendrocyte precursor cell
1
2
pancreatic A cell
3
pancreatic stellate cell
1
2
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
1
2
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
schwann cell
1
2
stromal cell of bone marrow
2
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
T follicular helper cell
2
Th2 cell
1
1
activated CD8-positive, alpha-beta T cell
1
1
alveolar macrophage
1
1
amnion mesenchymal stem cell
1
1
amniotic stem cell
1
1
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
epidermal melanocyte
1
1
epithelial cell of amnion
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
leukemic stem cell
1
1
leukocyte
2
luteal cell
1
1
mammary stem cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
mature natural killer cell
2
mature neutrophil
1
1
melanocyte
1
1
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
1
1
microglial cell
1
1
myoepithelial cell
1
1
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
regular cardiac myocyte
1
1
renal proximal tubule cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
smooth muscle cell of the coronary artery
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of artery
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
inflammatory macrophage
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
neural cell
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal epithelial cell
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
retinal bipolar neuron
1
seminoma cell
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
See all biosamples
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