Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1616
candidate regulatory elements
1322
target gene predictions
975
histone modifications
817
binding sites
373
accessible chromatin
118
variant allelic effects
39
chromatin state
13
caQTL
10
eQTL
3
hQTL
2
meQTL
2
other
2
pQTL
2
variant to gene
1
sQTL
Date released
2364
February, 2021
1624
September, 2022
284
June, 2020
270
May, 2021
264
February, 2024
107
November, 2021
101
October, 2022
82
May, 2020
44
March, 2020
33
August, 2017
32
August, 2021
30
November, 2022
28
January, 2021
12
February, 2023
8
May, 2022
5
September, 2023
1
April, 2019
1
August, 2020
1
August, 2022
1
January, 2020
1
January, 2022
1
November, 2019
Available data
5823
bed bed3+
897
tsv
844
bed bed9
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
5293
Homo sapiens
Biosample type
2121
cell line
1643
tissue
1190
primary cell
335
in vitro differentiated cells
4
stem cell
Organ
382
epithelium
288
brain
275
connective tissue
274
kidney
265
musculature of body
230
lung
217
intestine
190
bodily fluid
181
blood
176
embryo
161
limb
160
skin of body
152
heart
137
vasculature
134
large intestine
109
extraembryonic component
105
blood vessel
104
pancreas
stomach
87
liver
75
uterus
70
mammary gland
63
prostate gland
62
eye
62
small intestine
60
bone element
54
lymph node
54
penis
54
placenta
51
adrenal gland
48
ureter
44
adipose tissue
38
artery
37
thymus
36
gonad
31
esophagus
29
spinal cord
25
spleen
19
testis
18
lymphoid tissue
16
ovary
16
thyroid gland
16
vein
13
mouth
12
bronchus
12
nerve
11
lymphatic vessel
11
pituitary gland
9
bone marrow
9
breast
7
skeleton
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
Project
5155
AMP
107
ENCODE
32
T1D
1
ITG
Genome assembly (visualization)
5287
hg19
425
GRCh38
1
hg18
organ_slims!
tongue
stomach
files.file_type!
bigWig
BIOSAMPLE
TYPE
5295 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
accessible chromatin
variant allelic effects
chromatin state
caQTL
eQTL
hQTL
meQTL
other
pQTL
variant to gene
sQTL
cell line
HeLa-S3
5
55
1
A549
21
19
1
2
1
H1-hESC
1
39
1
2
1
K562
7
23
1
2
1
1
MCF-7
9
6
2
3
1
+ See 760 more…
tissue
heart
37
20
1
1
2
2
brain
29
16
3
1
1
1
lung
33
17
muscle of arm
33
16
1
kidney
29
14
2
1
1
1
1
+ See 192 more…
primary cell
monocyte
2
86
1
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
common myeloid progenitor, CD34-positive
27
14
CD14-positive monocyte
8
19
B cell
14
10
+ See 271 more…
in vitro differentiated cells
neural progenitor cell
5
5
14
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
1
3
4
mesenchymal stem cell
3
3
1
1
1
T-cell acute lymphoblastic leukemia
5
3
+ See 99 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download