Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1621
candidate regulatory elements
1326
target gene predictions
968
histone modifications
869
accessible chromatin
796
binding sites
111
variant allelic effects
40
chromatin state
29
gene expression
10
caQTL
10
eQTL
3
hQTL
2
meQTL
2
other
2
pQTL
2
variant to gene
1
sQTL
Date released
2364
February, 2021
1627
September, 2022
327
November, 2021
312
February, 2024
282
June, 2020
282
May, 2021
123
May, 2020
97
October, 2022
56
January, 2020
56
January, 2021
52
August, 2021
42
March, 2020
41
November, 2022
33
August, 2017
27
February, 2023
16
April, 2020
15
May, 2022
10
November, 2019
9
October, 2019
5
January, 2022
5
September, 2023
3
September, 2018
2
November, 2020
1
April, 2019
1
August, 2020
1
August, 2022
1
June, 2021
1
May, 2019
Available data
5760
bed bed3+
837
bed bed9
836
tsv
515
bigWig
106
txt
34
bed bed9+
32
bigBed bed9
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
5746
Homo sapiens
Biosample type
2115
cell line
1804
tissue
1498
primary cell
369
in vitro differentiated cells
4
stem cell
Organ
564
epithelium
330
connective tissue
310
kidney
309
brain
281
musculature of body
239
lung
228
intestine
190
bodily fluid
181
blood
178
embryo
175
limb
174
heart
vasculature
165
skin of body
164
pancreas
137
large intestine
128
blood vessel
113
liver
112
extraembryonic component
98
eye
93
stomach
76
uterus
73
mammary gland
70
bone element
64
small intestine
63
prostate gland
57
adrenal gland
56
placenta
54
lymph node
54
penis
51
ureter
49
adipose tissue
47
artery
38
thymus
37
gonad
33
esophagus
29
spinal cord
26
spleen
19
testis
18
lymphoid tissue
17
ovary
17
thyroid gland
17
vein
15
skeleton
14
bronchus
14
lymphatic vessel
14
nerve
13
mouth
11
bone marrow
11
pituitary gland
9
breast
7
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
Project
5388
AMP
327
ENCODE
60
T1D
16
LungMap
1
ITG
Genome assembly (visualization)
5758
hg19
770
GRCh38
1
hg18
organ_slims!
vasculature
BIOSAMPLE
TYPE
5792 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
variant allelic effects
chromatin state
gene expression
caQTL
eQTL
hQTL
meQTL
other
pQTL
variant to gene
sQTL
cell line
HeLa-S3
5
55
1
A549
21
19
1
1
2
H1-hESC
1
39
1
1
2
K562
7
23
1
1
2
1
MCF-7
9
6
2
1
3
+ See 756 more…
tissue
heart
37
20
1
5
1
2
stomach
40
21
1
3
kidney
29
14
2
10
1
1
1
1
brain
29
16
3
2
1
1
muscle of arm
33
16
1
1
+ See 211 more…
primary cell
monocyte
2
86
18
1
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
common myeloid progenitor, CD34-positive
27
14
B cell
14
10
6
endothelial cell
7
1
15
2
2
2
1
+ See 306 more…
in vitro differentiated cells
neural progenitor cell
5
5
14
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
4
1
4
extended pluripotent stem (EPS) cells
9
mesenchymal stem cell
3
3
1
1
1
+ See 106 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download