Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
606
gene expression
502
accessible chromatin
140
differential activity
63
Fine-mapped variants
22
eQTL
4
variant allelic effects
3
target gene predictions
2
variant to gene
1
chromatin state
1
representative DNase hypersensitivity sites
Date released
246
September, 2023
217
November, 2021
187
February, 2021
101
May, 2021
91
February, 2024
70
January, 2020
70
March, 2020
68
August, 2021
53
March, 2023
52
May, 2020
44
February, 2020
29
March, 2024
28
January, 2021
19
February, 2023
16
April, 2020
11
November, 2022
9
November, 2019
9
October, 2019
7
May, 2022
4
January, 2022
3
November, 2020
3
September, 2018
2
January, 2018
2
September, 2022
1
July, 2020
1
June, 2021
1
May, 2019
Available data
5760
bed bed3+
837
bed bed9
834
tsv
515
bigWig
106
txt
34
bed bed9+
32
bigBed bed9
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
1299
Homo sapiens
Biosample type
927
primary cell
306
tissue
87
in vitro differentiated cells
24
cell line
Organ
491
epithelium
287
kidney
133
pancreas
118
connective tissue
vasculature
88
brain
66
blood vessel
51
heart
42
liver
38
eye
31
limb
30
musculature of body
27
adipose tissue
25
artery
14
bone element
14
intestine
12
embryo
10
lung
8
lymphatic vessel
8
nerve
8
skeleton
7
adrenal gland
7
skin of body
7
stomach
5
large intestine
5
spinal cord
4
esophagus
3
extraembryonic component
3
gonad
3
mammary gland
3
ureter
3
uterus
2
bone marrow
2
bronchus
2
ovary
2
placenta
2
small intestine
2
spleen
2
thyroid gland
2
vein
1
blood
1
bodily fluid
1
breast
1
lymphoid tissue
1
mouth
1
pituitary gland
1
prostate gland
1
testis
1
thymus
1
tongue
1
urinary bladder
1
vagina
Project
837
AMP
246
KPMP
217
ENCODE
28
T1D
16
LungMap
Genome assembly (visualization)
594
hg19
441
GRCh38
organ_slims!
vasculature
BIOSAMPLE
TYPE
1344 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
differential activity
Fine-mapped variants
eQTL
variant allelic effects
target gene predictions
variant to gene
chromatin state
representative DNase hypersensitivity sites
primary cell
monocyte
15
16
endothelial cell
8
13
epithelial cell of proximal tubule
15
1
hepatocyte
9
7
fibroblast
14
+ See 274 more…
tissue
retina
1
16
1
kidney
7
9
1
islet of Langerhans
9
4
2
pigmented layer of retina
13
subcutaneous adipose tissue
5
2
1
3
1
+ See 107 more…
in vitro differentiated cells
cardiomyocytes
11
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
9
neural progenitor cell
7
+ See 25 more…
cell line
EndoC_BH1
8
1
1
H1-hESC
8
HepG2
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
+ See 3 more…
See all biosamples
Download