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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
483
accessible chromatin
370
target gene predictions
356
gene expression
197
chromatin state
161
candidate regulatory elements
152
differential activity
118
histone modifications
80
variant allelic effects
44
eQTL
29
binding sites
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
487
September, 2022
February, 2021
333
November, 2021
281
September, 2023
256
May, 2021
152
February, 2024
86
May, 2020
56
January, 2021
55
March, 2023
53
June, 2020
42
August, 2021
40
May, 2022
37
January, 2022
31
October, 2022
23
January, 2020
19
April, 2020
16
February, 2020
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
5
March, 2020
4
February, 2023
3
November, 2020
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1261
bed bed3+
467
tsv
406
bigWig
164
bed bed9
27
bed bed9+
25
txt
13
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1968
Homo sapiens
Biosample type
2013
primary cell
2011
tissue
1048
cell line
281
in vitro differentiated cells
4
stem cell
Organ
655
epithelium
225
connective tissue
216
kidney
141
vasculature
119
pancreas
94
blood vessel
72
skin of body
56
liver
41
musculature of body
34
mammary gland
32
extraembryonic component
30
brain
29
lung
25
heart
22
intestine
22
penis
21
artery
18
eye
17
embryo
15
lymphatic vessel
15
vein
11
adrenal gland
11
bronchus
11
stomach
9
esophagus
8
bone element
8
bone marrow
8
prostate gland
7
placenta
6
large intestine
4
gonad
4
small intestine
3
mouth
3
spinal cord
3
thyroid gland
3
uterus
2
ovary
1
adipose tissue
1
blood
1
bodily fluid
1
limb
1
pericardium
1
testis
1
thymus
1
trachea
Project
1321
AMP
333
ENCODE
281
KPMP
59
T1D
19
LungMap
Genome assembly (visualization)
1469
hg19
706
GRCh38
month_released!
February, 2021
BIOSAMPLE
TYPE
2013 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
gene expression
chromatin state
candidate regulatory elements
differential activity
histone modifications
variant allelic effects
eQTL
binding sites
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
2
15
84
4
2
1
1
CD8-positive, alpha-beta T cell
4
5
3
1
30
common myeloid progenitor, CD34-positive
14
13
13
B cell
6
10
2
8
9
endothelial cell
15
7
5
2
1
2
fibroblast
16
4
6
2
1
hepatocyte
8
3
10
1
1
3
2
macrophage
12
3
2
3
7
1
CD14-positive monocyte
19
4
4
CD4-positive, alpha-beta memory T cell
9
9
9
regulatory T cell
5
4
7
3
3
2
T cell
6
4
4
4
2
2
pericyte cell
10
10
1
1
CD8-positive, alpha-beta memory T cell
7
7
7
T-helper 1 cell
3
3
7
3
3
1
smooth muscle cell
9
6
1
2
1
1
T-helper 17 cell
2
3
7
3
3
1
mononuclear cell
6
6
6
pancreatic beta cell
8
2
3
3
1
endothelial cell of hepatic sinusoid
6
4
6
natural killer cell
3
5
1
3
3
1
pancreatic acinar cell
6
3
3
3
1
pancreatic delta cell
5
4
3
3
1
pancreatic ductal cell
6
3
3
3
1
T-helper 2 cell
2
3
3
3
3
1
astrocyte
8
4
1
1
1
endothelial cell of umbilical vein
2
4
5
2
1
1
pancreatic alpha cell
7
2
3
3
trophoblast cell
1
5
4
4
fibroblast of lung
4
4
3
2
keratinocyte
2
5
3
2
1
neutrophil
3
2
2
2
2
1
1
excitatory neuron
12
fibroblast of cardiac tissue
2
4
3
3
foreskin keratinocyte
4
4
4
mammary gland epithelial cell
1
4
3
3
1
skeletal muscle myoblast
2
2
1
3
2
1
1
skeletal muscle satellite cell
5
2
2
2
1
erythroblast
5
2
2
2
fibroblast of dermis
4
3
3
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
1
2
1
1
1
1
osteoblast
4
2
1
1
1
1
kidney tubule cell
2
2
1
2
2
memory B cell
4
2
3
naive T cell
3
3
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
3
1
neurosphere
3
3
3
skeletal muscle fiber
5
2
2
skin fibroblast
2
3
2
2
epithelial cell of proximal tubule
1
1
2
1
1
1
1
glomerular endothelial cell
2
1
2
1
1
1
glutamatergic neuron
6
2
pancreatic stellate cell
2
1
2
3
CD4-positive, alpha-beta T cell
1
3
3
bronchial epithelial cell
1
2
2
2
epithelial cell of prostate
3
2
2
foreskin fibroblast
1
2
1
1
2
hepatic stellate cell
3
1
1
1
1
kidney glomerular epithelial cell
2
1
1
1
1
1
luminal epithelial cell of mammary gland
2
3
1
1
mature neutrophil
7
renal cortical epithelial cell
2
1
1
1
1
1
retinal pigment epithelial cell
3
1
1
1
1
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
type II pneumocyte
4
2
1
alternatively activated macrophage
1
1
4
choroid plexus epithelial cell
1
1
1
1
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis blood vessel endothelial cell
2
2
2
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
fibroblast of breast
2
2
2
glomerular visceral epithelial cell
2
1
1
1
1
kidney epithelial cell
1
1
1
1
1
1
mesenchymal stem cell
2
1
1
1
1
myoepithelial cell of mammary gland
2
2
2
naive B cell
3
2
1
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
2
1
2
1
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
1
2
2
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
T follicular helper cell
2
2
1
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
astrocyte of the cerebellum
1
1
1
1
1
astrocyte of the hippocampus
1
1
1
1
1
basal cell
2
1
2
cardiac muscle cell
1
1
2
1
central memory CD8-positive, alpha-beta T cell
2
3
effector memory CD8-positive, alpha-beta T cell
2
3
epithelial cell of esophagus
1
1
1
2
fibroblast of mammary gland
1
1
1
1
1
fibroblast of pulmonary artery
1
1
1
1
1
fibroblast of villous mesenchyme
1
1
1
1
1
gabaergic neuron
3
2
inflammatory macrophage
1
1
3
inhibitory neuron
5
kidney capillary endothelial cell
1
1
1
1
1
pancreatic endothelial cell
1
1
3
skeletal muscle cell
1
1
1
1
1
smooth muscle cell of the brain vasculature
1
1
1
1
1
CD1c-positive myeloid dendritic cell
1
1
1
1
activated CD4-positive, alpha-beta T cell
1
2
1
adipocyte
2
1
1
blood vessel smooth muscle cell
2
2
brain microvascular endothelial cell
1
1
1
1
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of peridontal ligament
1
1
1
1
fibroblast of the aortic adventitia
1
1
1
1
gamma-delta T cell
2
2
iris pigment epithelial cell
1
1
1
1
mammary epithelial cell
1
1
1
1
mast cell
1
1
1
1
mature natural killer cell
2
2
megakaryocyte
2
2
memory T cell
2
2
memory regulatory T cell
2
2
mesothelial cell
2
1
1
myofibroblast cell
1
3
non-pigmented ciliary epithelial cell
1
1
1
1
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
pulmonary artery endothelial cell
1
1
1
1
smooth muscle cell of the esophagus
2
2
type I pneumocyte
3
1
Cycling Mononuclear Phagocyte
3
Mast Cell
3
Schwann cell
1
2
activated CD8-positive, alpha-beta T cell
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
aortic endothelial cell
2
1
astrocyte of the spinal cord
1
1
1
blood cell
3
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
fibroblast of gingiva
1
1
1
fibroblast of the conjunctiva
1
1
1
foreskin melanocyte
1
1
1
glial cell
2
1
goblet cell
1
2
leukocyte
2
1
lung microvascular endothelial cell
1
1
1
mammary stem cell
1
1
1
mesangial cell
2
1
microglial cell
1
1
1
naive B cel
2
1
naive regulatory T cell
2
1
naive t cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic quiescent stellate cell
3
parietal cell
1
1
1
peptic cell
1
1
1
plasma cell
2
1
plasmacytoid dendritic cell
2
1
regular cardiac myocyte
1
1
1
schwann cell
2
1
smooth muscle cell of the coronary artery
1
1
1
stromal cell of bone marrow
1
1
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Muller cell
2
T-cell
2
acute myeloid leukemia cell
2
alveolar macrophage
1
1
aortic adventitial fibroblast
1
1
basal cell of epidermis
1
1
bone marrow cell
2
brain pericyte
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
colon goblet cell
1
1
conventional dendritic cell
1
1
eccrine cell
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
intestinal tuft cell
1
1
kidney distal convoluted tubule epithelial cell
1
1
luteal cell
1
1
mature NK T cell
1
1
melanocyte
1
1
myeloid dendritic cell
1
1
myoepithelial cell
1
1
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuron
2
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
paneth cell
1
1
regular atrial cardiac myocyte
1
1
renal epithelial cell
1
1
renal principal cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small intestine goblet cell
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-lymphocyte
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Ishikawa
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated pancreatic stellate cell
1
adult endothelial progenitor cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
effector memory CD4-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
erythrocyte
1
erythroid cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
gastric goblet cell
1
granulosa cell
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
islet of Langerhans
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
myotube
1
neoplastic cell
1
neuroendocrine cell
1
non-neuronal cell
1
pancreatic cell
1
pancreatic endocrine cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral blood stem cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
preadipocyte
1
primordial germ cell
1
progenitor cell
1
proximal tubule cells with injury markers
1
pulmonary interstitial fibroblast
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
1
retinal bipolar neuron
1
sensory neuron
1
somatic gonadal cell
1
sympathetic neuron
1
tracheal epithelial cell
1
trophoblast giant cell
1
ureteric bud
1
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