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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
443
accessible chromatin
409
gene expression
328
candidate regulatory elements
298
target gene predictions
197
chromatin state
152
differential activity
100
binding sites
96
histone modifications
81
variant allelic effects
43
eQTL
11
caQTL
Date released
487
September, 2022
456
February, 2021
333
November, 2021
281
September, 2023
May, 2021
152
February, 2024
86
May, 2020
January, 2021
55
March, 2023
53
June, 2020
42
August, 2021
40
May, 2022
37
January, 2022
31
October, 2022
23
January, 2020
19
April, 2020
16
February, 2020
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
5
March, 2020
4
February, 2023
3
November, 2020
2
May, 2024
July, 2020
1
June, 2021
1
March, 2024
Available data
1360
bed bed3+
522
tsv
369
bigWig
164
bed bed9
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2113
Homo sapiens
Biosample type
2621
tissue
2289
cell line
2158
primary cell
431
in vitro differentiated cells
4
stem cell
Organ
782
epithelium
309
kidney
274
connective tissue
167
vasculature
112
blood vessel
96
skin of body
94
pancreas
61
liver
50
musculature of body
45
mammary gland
40
penis
39
extraembryonic component
35
brain
33
lung
30
heart
28
artery
23
eye
23
intestine
21
embryo
19
vein
17
lymphatic vessel
16
bronchus
12
bone element
11
adrenal gland
11
bone marrow
11
stomach
10
esophagus
10
placenta
9
blood
9
bodily fluid
9
prostate gland
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
2
ovary
1
adipose tissue
1
pericardium
1
testis
1
thymus
Project
1520
AMP
333
ENCODE
281
KPMP
19
LungMap
3
T1D
2
community
Genome assembly (visualization)
1560
hg19
610
GRCh38
month_released!
July, 2020
January, 2021
May, 2021
BIOSAMPLE
TYPE
2158 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
candidate regulatory elements
target gene predictions
chromatin state
differential activity
binding sites
histone modifications
variant allelic effects
eQTL
caQTL
primary cell
common myeloid progenitor, CD34-positive
27
13
13
B cell
6
14
9
8
endothelial cell
14
8
6
2
1
2
1
2
CD4-positive, alpha-beta memory T cell
14
9
9
hepatocyte
8
12
1
2
1
1
4
2
fibroblast
16
4
1
6
2
macrophage
11
1
2
3
7
1
regulatory T cell
4
5
5
3
3
1
1
2
epithelial cell of proximal tubule
1
16
2
1
1
1
1
CD8-positive, alpha-beta memory T cell
8
7
7
T cell
6
4
4
4
2
2
pericyte cell
10
1
10
1
T-helper 1 cell
3
5
6
3
3
1
glomerular endothelial cell
2
14
2
1
1
1
mononuclear cell
7
6
6
1
smooth muscle cell
9
1
6
2
1
1
T-helper 17 cell
2
5
5
3
3
1
endothelial cell of umbilical vein
2
6
3
5
2
1
foreskin keratinocyte
11
4
4
natural killer cell
2
2
6
3
3
1
1
trophoblast cell
1
7
4
4
1
CD14-positive monocyte
8
4
4
astrocyte
8
1
2
3
1
1
endothelial cell of hepatic sinusoid
6
4
6
keratinocyte
2
3
4
3
1
2
1
osteoblast
5
2
2
1
1
3
2
skeletal muscle myoblast
2
1
4
2
3
2
1
1
CD4-positive, alpha-beta T cell
1
8
3
3
T-helper 2 cell
2
1
5
3
3
1
fibroblast of lung
6
3
4
2
foreskin fibroblast
1
6
1
1
4
2
pancreatic ductal cell
5
2
1
3
1
2
1
CD8-positive, alpha-beta T cell
3
1
7
2
1
mammary gland epithelial cell
1
3
4
3
1
1
neurosphere
7
3
3
pancreatic beta cell
6
2
1
3
1
skeletal muscle satellite cell
5
2
2
2
2
bronchial epithelial cell
1
4
2
2
2
1
excitatory neuron
12
fibroblast of cardiac tissue
2
3
4
3
mammary epithelial cell
1
3
1
4
3
pancreatic acinar cell
5
2
1
3
1
pancreatic alpha cell
5
2
1
3
1
fibroblast of dermis
4
3
3
1
glomerular visceral epithelial cell
2
5
2
1
1
monocyte
4
1
1
2
3
pancreatic delta cell
3
2
2
3
1
dermis blood vessel endothelial cell
6
2
2
erythroblast
5
1
2
2
kidney tubule cell
2
1
3
2
2
neutrophil
4
3
2
1
retinal pigment epithelial cell
3
2
1
1
2
1
hepatic stellate cell
3
1
1
1
1
1
1
mature neutrophil
7
1
1
naive T cell
3
3
3
skeletal muscle fiber
5
2
2
skin fibroblast
2
2
3
2
epithelial cell of prostate
4
2
2
fibroblast of breast
4
2
2
fibroblast of mammary gland
1
2
1
1
2
1
fibroblast of pulmonary artery
1
2
1
1
2
1
fibroblast of villous mesenchyme
1
2
1
1
2
1
glutamatergic neuron
6
2
kidney glomerular epithelial cell
2
1
2
1
1
1
myoepithelial cell of mammary gland
4
2
2
renal cortical epithelial cell
2
1
2
1
1
1
CD1c-positive myeloid dendritic cell
1
2
1
1
1
1
choroid plexus epithelial cell
1
2
1
1
1
1
kidney epithelial cell
1
1
2
1
1
1
kidney interstitial cell
1
6
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
2
1
3
1
mesangial cell
2
5
mesenchymal stem cell
2
1
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
4
1
1
pulmonary artery endothelial cell
1
2
1
1
1
1
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
type II pneumocyte
4
2
1
alternatively activated macrophage
1
1
4
astrocyte of the cerebellum
1
2
1
1
1
astrocyte of the hippocampus
1
2
1
1
1
cardiac muscle cell
1
2
1
2
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
epithelial cell of esophagus
2
1
1
2
foreskin melanocyte
4
1
1
olfactory receptor cell
6
pancreatic stellate cell
1
2
3
peripheral blood mononuclear cell
4
1
1
plasma cell
2
1
1
1
1
skeletal muscle cell
1
2
1
1
1
smooth muscle cell of the brain vasculature
1
2
1
1
1
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
basal cell
2
1
2
brain microvascular endothelial cell
1
2
1
1
fibroblast of peridontal ligament
1
2
1
1
fibroblast of the aortic adventitia
2
1
1
1
gabaergic neuron
3
2
inflammatory macrophage
1
1
3
inhibitory neuron
5
iris pigment epithelial cell
1
2
1
1
kidney capillary endothelial cell
1
1
1
1
1
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
1
4
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
3
1
1
mast cell
1
1
1
1
1
memory B cell
3
1
1
myofibroblast cell
1
1
3
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
1
1
non-pigmented ciliary epithelial cell
1
2
1
1
pancreatic endothelial cell
1
1
3
tracheal epithelial cell
1
2
2
T-cell
4
acute myeloid leukemia cell
2
2
adipocyte
2
1
1
adult endothelial progenitor cell
3
1
aortic adventitial fibroblast
1
2
1
aortic endothelial cell
2
1
1
astrocyte of the spinal cord
2
1
1
blood vessel smooth muscle cell
2
2
cardiac fibroblast
3
1
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of gingiva
2
1
1
fibroblast of the conjunctiva
2
1
1
gamma-delta T cell
2
2
kidney connecting tubule epithelial cell
4
leukocyte
2
2
mesothelial cell
2
1
1
naive B cell
2
1
1
nephron progenitor
4
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
preadipocyte
1
1
2
renal epithelial cell
1
2
1
smooth muscle cell of the esophagus
2
2
stromal cell of bone marrow
2
1
1
type I pneumocyte
3
1
vascular associated smooth muscle cell
2
2
CD4-positive helper T cell
1
2
Cycling Mononuclear Phagocyte
3
Ishikawa
1
1
1
Mast Cell
3
S-shaped body
3
T follicular helper cell
2
1
Th1 cell
1
1
1
Th17 cell
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
central memory CD8-positive, alpha-beta T cell
2
1
ciliated cell
2
1
club cell
2
1
effector memory CD8-positive, alpha-beta T cell
2
1
endocardial cell
2
1
enteric neuron
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
glial cell
2
1
goblet cell
1
2
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mammary stem cell
1
1
1
meso-epithelial cell
1
1
1
microglial cell
1
1
1
mononuclear cell of bone marrow
2
1
myotube
2
1
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic polypeptide-secreting cell
1
1
1
pancreatic quiescent stellate cell
3
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
pre-B acute lymphoblastic leukemia cell
1
2
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
schwann cell
2
1
thyroid follicular cell
1
1
1
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
Th2 cell
1
1
activated CD4-positive, alpha-beta T cell
1
1
alveolar macrophage
1
1
articular chondrocyte
2
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
cholangiocyte
1
1
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD4-positive, alpha-beta T cell
1
1
endothelial cell of coronary artery
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
luteal cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
mature natural killer cell
2
megakaryocyte
1
1
melanocyte
1
1
memory T cell
2
memory regulatory T cell
2
myoepithelial cell
1
1
naive regulatory T cell
2
neural cell
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
pancreatic A cell
2
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
renal principal cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
smooth muscle cell of the coronary artery
1
1
somatic muscle myotube
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type B pancreatic cell
2
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
ureteric bud
1
1
uterine smooth muscle cell
1
1
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD8-positive, alpha-beta T cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
endothelial cell of artery
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
erythrocyte
1
erythroid lineage cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature eosinophil
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
naive B cel
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic cell
1
pancreatic immune cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
plasmacytoid dendritic cell
1
progenitor cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
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