Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
75
candidate regulatory elements
42
target gene predictions
40
chromatin state
13
accessible chromatin
6
binding sites
5
histone modifications
4
eQTL
4
gene expression
3
Fine-mapped variants
2
variant allelic effects
Date released
107
September, 2022
49
February, 2021
8
June, 2020
6
November, 2021
May, 2021
4
March, 2020
3
August, 2017
3
February, 2020
3
February, 2024
3
January, 2022
3
May, 2020
2
March, 2024
1
January, 2020
1
November, 2019
1
October, 2022
Available data
146
bed bed3+
37
bed bed9
8
tsv
5
bigWig
1
bigBed bed9
Organism
194
Homo sapiens
Biosample type
156
tissue
32
cell line
6
primary cell
Organ
909
epithelium
652
kidney
455
brain
443
connective tissue
369
musculature of body
307
lung
283
intestine
263
vasculature
251
heart
241
limb
237
pancreas
214
bodily fluid
208
embryo
203
blood
201
blood vessel
199
skin of body
169
large intestine
153
liver
143
extraembryonic component
117
stomach
109
eye
89
bone element
86
adipose tissue
85
mammary gland
83
small intestine
81
uterus
76
prostate gland
73
artery
72
placenta
71
adrenal gland
64
ureter
63
penis
61
lymph node
49
gonad
48
thymus
45
esophagus
42
spinal cord
33
spleen
26
testis
25
nerve
24
lymphoid tissue
22
ovary
22
thyroid gland
22
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
12
breast
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
3
pituitary gland
1
pericardium
Project
188
AMP
6
ENCODE
Genome assembly (visualization)
187
hg19
54
GRCh38
month_released!
August, 2018
May, 2021
BIOSAMPLE
TYPE
194 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
binding sites
histone modifications
eQTL
gene expression
Fine-mapped variants
variant allelic effects
tissue
large intestine
27
13
13
1
1
tibial nerve
6
3
4
3
2
2
3
2
sigmoid colon
10
6
5
1
transverse colon
8
4
4
1
1
colonic mucosa
4
2
3
1
+ See 8 more…
cell line
HT-29
2
1
1
1
1
1
SW480
2
1
1
1
1
1
HCT116
2
3
1
RKO
1
1
1
1
HCT-116 cell
1
2
+ See 3 more…
primary cell
colon epithelial cell
3
3
See all biosamples
Download