Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
270
accessible chromatin
171
gene expression
139
target gene predictions
110
differential activity
2
caQTL
Date released
333
November, 2021
281
September, 2023
56
January, 2021
19
April, 2020
2
October, 2022
1
February, 2024
Available data
411
bed bed3+
281
tsv
269
bigWig
Organism
692
Homo sapiens
Biosample type
692
primary cell
9
cell line
5
tissue
Organ
309
epithelium
143
kidney
70
connective tissue
44
vasculature
38
pancreas
25
blood vessel
19
intestine
12
lung
11
musculature of body
10
adrenal gland
10
heart
10
skin of body
9
lymphatic vessel
9
stomach
6
large intestine
6
mammary gland
5
artery
5
liver
4
esophagus
4
eye
4
small intestine
3
bone element
3
bone marrow
3
bronchus
3
extraembryonic component
2
embryo
2
gonad
2
ovary
2
placenta
2
thyroid gland
2
uterus
1
thymus
Project
AMP
333
ENCODE
281
KPMP
59
T1D
19
LungMap
Genome assembly (visualization)
409
hg19
336
GRCh38
month_released!
August, 2020
award.project!
AMP
BIOSAMPLE
TYPE
692 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
differential activity
caQTL
primary cell
pericyte cell
10
9
endothelial cell
11
7
fibroblast
14
4
macrophage
11
2
excitatory neuron
12
smooth muscle cell
6
6
astrocyte
7
2
colon epithelial cell
3
3
pancreatic acinar cell
4
2
pancreatic alpha cell
4
2
pancreatic beta cell
4
2
pancreatic delta cell
3
3
type II pneumocyte
4
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
T cell
5
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
cortical cell of adrenal gland
3
2
erythroblast
5
inhibitory neuron
5
pancreatic ductal cell
3
2
B cell
4
CD8-positive, alpha-beta T cell
2
2
blood vessel smooth muscle cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
gabaergic neuron
2
2
glutamatergic neuron
2
2
keratinocyte
2
2
luminal epithelial cell of mammary gland
2
2
memory B cell
2
2
skeletal muscle satellite cell
3
1
smooth muscle cell of the esophagus
2
2
type I pneumocyte
3
1
CD4-positive helper T cell
1
2
Cycling Mononuclear Phagocyte
3
Mast Cell
3
basal cell
2
1
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
enterocyte
3
fibroblast of cardiac tissue
2
1
megakaryocyte
2
1
mesothelial cell
2
1
natural killer cell
2
1
oligodendrocyte precursor cell
2
1
schwann cell
2
1
skeletal muscle fiber
3
CD4-positive, alpha-beta T cell
1
1
Muller cell
2
activated CD4-positive, alpha-beta T cell
1
1
activated CD8-positive, alpha-beta T cell
1
1
alveolar macrophage
1
1
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
colon goblet cell
1
1
conventional dendritic cell
1
1
eccrine cell
1
1
endothelial cell of hepatic sinusoid
2
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
hepatocyte
1
1
intestinal tuft cell
1
1
luteal cell
1
1
mammary gland epithelial cell
1
1
mast cell
1
1
mature NK T cell
1
1
melanocyte
1
1
mesangial cell
2
microglial cell
1
1
monocyte
1
1
myoepithelial cell
1
1
naive B cell
1
1
naive t cell
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
1
natural killer cell mediated cytotoxicity
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
oligodendrocyte
1
1
pancreatic A cell
2
pancreatic polypeptide-secreting cell
1
1
pancreatic stellate cell
1
1
paneth cell
1
1
parietal cell
1
1
peptic cell
1
1
plasma cell
1
1
plasmacytoid dendritic cell
1
1
regular atrial cardiac myocyte
1
1
regulatory T cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
skin fibroblast
1
1
small intestine goblet cell
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
thyroid follicular cell
1
1
type B pancreatic cell
2
type I cell of adrenal cortex
1
1
type I muscle cell
1
1
type II cell of adrenal cortex
1
1
type II muscle cell
1
1
uterine smooth muscle cell
1
1
ventricular cardiac muscle cell
1
1
adipocyte
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
endothelial cell of artery
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
gastric goblet cell
1
glial cell
1
goblet cell
1
hepatic stellate cell
1
hepatoblast
1
islet of Langerhans
1
lung neuroendocrine cell
1
metanephros
1
myofibroblast cell
1
neuroendocrine cell
1
neuron
1
parietal epithelial cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
retinal bipolar neuron
1
retinal pigment epithelial cell
1
sympathetic neuron
1
trophoblast giant cell
1
ureteric bud
1
See all biosamples
Download