Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1650
candidate regulatory elements
1345
target gene predictions
960
histone modifications
868
accessible chromatin
816
binding sites
122
variant allelic effects
40
chromatin state
13
caQTL
8
eQTL
3
hQTL
2
meQTL
2
other
2
variant to gene
Date released
2397
February, 2021
1660
September, 2022
329
November, 2021
291
February, 2024
285
June, 2020
285
May, 2021
135
May, 2020
101
October, 2022
66
January, 2020
56
January, 2021
August, 2021
44
March, 2020
41
November, 2022
34
August, 2017
31
February, 2023
19
April, 2020
15
May, 2022
13
November, 2019
9
October, 2019
5
January, 2022
5
September, 2023
3
September, 2018
2
November, 2020
1
April, 2019
1
August, 2020
1
August, 2022
1
June, 2021
Available data
5831
bed bed3+
860
bed bed9
848
tsv
524
bigWig
83
txt
40
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
5785
Homo sapiens
Biosample type
2124
cell line
1807
tissue
1570
primary cell
324
in vitro differentiated cells
4
stem cell
Organ
536
epithelium
328
connective tissue
309
brain
293
kidney
281
musculature of body
239
lung
228
intestine
189
bodily fluid
181
blood
178
embryo
175
limb
173
heart
165
skin of body
163
vasculature
158
pancreas
137
large intestine
123
blood vessel
112
extraembryonic component
98
eye
97
liver
93
stomach
76
uterus
73
mammary gland
70
bone element
64
small intestine
63
prostate gland
57
adrenal gland
56
placenta
54
lymph node
54
penis
51
ureter
48
adipose tissue
46
artery
38
thymus
37
gonad
esophagus
29
spinal cord
26
spleen
19
testis
18
lymphoid tissue
17
ovary
17
thyroid gland
17
vein
15
skeleton
14
bronchus
14
lymphatic vessel
14
nerve
13
mouth
11
bone marrow
11
pituitary gland
9
breast
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
Project
5423
AMP
329
ENCODE
60
T1D
19
LungMap
Genome assembly (visualization)
5824
hg19
763
GRCh38
month_released!
August, 2021
organ_slims!
tongue
esophagus
BIOSAMPLE
TYPE
5831 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
variant allelic effects
chromatin state
caQTL
eQTL
hQTL
meQTL
other
variant to gene
cell line
HeLa-S3
5
55
1
A549
21
19
1
1
2
H1-hESC
1
39
1
1
2
K562
7
23
1
1
2
1
MCF-7
9
6
2
1
3
+ See 760 more…
tissue
heart
37
20
1
5
1
2
stomach
40
21
1
3
brain
29
16
3
2
1
1
muscle of arm
33
16
1
1
kidney
29
14
2
3
1
1
+ See 212 more…
primary cell
monocyte
2
86
18
1
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
common myeloid progenitor, CD34-positive
27
14
B cell
14
10
6
endothelial cell
7
1
14
2
2
2
1
+ See 316 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
4
1
4
neural progenitor cell
5
5
1
mesenchymal stem cell
3
3
1
1
1
T-cell acute lymphoblastic leukemia
5
3
+ See 103 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download