Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1354
target gene predictions
977
histone modifications
817
binding sites
636
gene expression
385
accessible chromatin
167
differential activity
143
eQTL
136
variant allelic effects
75
chromatin state
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2576
February, 2021
1674
September, 2022
371
May, 2021
340
February, 2024
289
June, 2020
286
September, 2023
128
March, 2020
111
November, 2021
108
August, 2021
102
January, 2022
101
October, 2022
99
May, 2020
70
March, 2023
February, 2020
42
May, 2022
35
August, 2017
33
November, 2022
30
March, 2024
28
January, 2021
18
January, 2020
13
February, 2023
9
August, 2018
2
January, 2018
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
November, 2019
1
November, 2020
Available data
5923
bed bed3+
bed bed9
851
tsv
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6469
Homo sapiens
Biosample type
2169
cell line
2000
tissue
1879
primary cell
418
in vitro differentiated cells
4
stem cell
Organ
714
epithelium
531
kidney
361
brain
353
connective tissue
282
musculature of body
232
lung
223
intestine
205
pancreas
199
vasculature
193
bodily fluid
186
embryo
184
blood
177
heart
174
limb
165
skin of body
150
blood vessel
138
large intestine
117
liver
110
extraembryonic component
91
stomach
78
uterus
71
adipose tissue
70
mammary gland
65
bone element
65
prostate gland
63
small intestine
62
eye
55
artery
55
placenta
54
lymph node
54
penis
53
adrenal gland
48
ureter
41
gonad
37
thymus
36
esophagus
34
spinal cord
27
spleen
22
testis
19
lymphoid tissue
18
ovary
18
thyroid gland
18
vein
16
lymphatic vessel
16
nerve
15
mouth
13
pituitary gland
12
bronchus
11
breast
10
bone marrow
8
tongue
8
urinary bladder
8
vagina
7
skeleton
5
trachea
3
nose
Project
6034
AMP
281
KPMP
111
ENCODE
32
T1D
9
community
5
ITG
Genome assembly (visualization)
5535
hg19
602
GRCh38
4
hg18
month_released!
February, 2020
files.file_type!
bed bed9
bigWig
BIOSAMPLE
TYPE
6472 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
gene expression
accessible chromatin
differential activity
eQTL
variant allelic effects
chromatin state
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
2
8
1
A549
21
19
1
2
1
K562
7
23
1
2
1
1
EndoC_BH1
1
1
1
8
7
3
1
+ See 765 more…
tissue
stomach
40
21
1
1
3
1
heart
37
20
1
1
2
2
2
kidney
29
14
2
1
7
1
1
1
brain
29
16
3
1
1
2
1
lung
33
17
1
1
+ See 238 more…
primary cell
monocyte
2
86
1
15
2
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
3
1
common myeloid progenitor, CD34-positive
27
14
CD14-positive monocyte
8
19
B cell
14
10
2
+ See 407 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
7
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
1
3
4
cardiomyocytes
11
embryonic stem cell
1
1
1
6
+ See 120 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download